# 🎼🧬 `lightmotif-transfac` [![Star me](https://img.shields.io/github/stars/althonos/lightmotif.svg?style=social&label=Star&maxAge=3600)](https://github.com/althonos/lightmotif/stargazers) 

*(⚠️ Deprecated) A TRANSFAC parser implementation for the [`lightmotif`](https://crates.io/crates/lightmotif) crate.*

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🚨 **The TRANSFAC parser has been merged into the [`lightmotif-io`](https://crates.io/crates/lightmotif-io) crate, 
use the [`lightmotif_io::transfac`](https://docs.rs/lightmotif-io/latest/lightmotif_io/transfac) module instead of this crate.** 🚨

## 🗺️ Overview

The [TRANSFAC](https://en.wikipedia.org/wiki/TRANSFAC) database is a collection
of transcription factors with their binding sites. It provides
[position-specific scoring matrices](https://en.wikipedia.org/wiki/Position_weight_matrix)
for individual transcription factors or closesly related groups.

This crate provides a parser to load TRANSFAC binding sites into `lightmotif`
matrices to be used with the accelerated search pipeline. See the 
[`lightmotif`](https://crates.io/crates/lightmotif) crate for more information.

## 💭 Feedback

### ⚠️ Issue Tracker

Found a bug ? Have an enhancement request ? Head over to the [GitHub issue
tracker](https://github.com/althonos/lightmotif/issues) if you need to report
or ask something. If you are filing in on a bug, please include as much
information as you can about the issue, and try to recreate the same bug
in a simple, easily reproducible situation.

<!-- ### 🏗️ Contributing

Contributions are more than welcome! See [`CONTRIBUTING.md`](https://github.com/althonos/lightmotif/blob/master/CONTRIBUTING.md) for more details. -->

## 📋 Changelog

This project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html)
and provides a [changelog](https://github.com/althonos/lightmotif/blob/master/CHANGELOG.md)
in the [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) format.

## ⚖️ License

This library is provided under the open-source
[MIT license](https://choosealicense.com/licenses/mit/).

*This project was developed by [Martin Larralde](https://github.com/althonos/)
during his PhD project at the [European Molecular Biology Laboratory](https://www.embl.de/)
in the [Zeller team](https://github.com/zellerlab).*