# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies
#
# If you believe there's an error in this file please file an
# issue against the rust-lang/cargo repository. If you're
# editing this file be aware that the upstream Cargo.toml
# will likely look very different (and much more reasonable)

[package]
name = "lorikeet-rs"
version = "0.3.0"
authors = ["Rhys Newell <r.newell@uq.edu.au>"]
exclude = ["tests/*"]
description = "Strain resolver for metagenomics"
homepage = "https://rhysnewell.github.io/Lorikeet/"
documentation = "https://github.com/rhysnewell/Lorikeet"
readme = "README.md"
license = "GPL-3.0"
repository = "https://github.com/rhysnewell/Lorikeet"
[profile.bench]
opt-level = 3
lto = false
codegen-units = 16
debug = false
debug-assertions = false
rpath = false
panic = "unwind"
overflow-checks = false
incremental = false

[profile.dev]
opt-level = 0
lto = false
codegen-units = 16
debug = true
debug-assertions = true
rpath = false
panic = "unwind"
overflow-checks = true
incremental = true

[profile.release]
opt-level = 3
lto = false
codegen-units = 16
debug = false
debug-assertions = false
rpath = false
panic = "unwind"
overflow-checks = false
incremental = false

[profile.test]
opt-level = 0
lto = false
codegen-units = 16
debug = 2
debug-assertions = true
rpath = false
panic = "unwind"
overflow-checks = true
incremental = true
[dependencies.ansi_term]
version = "0.11"

[dependencies.approx]
version = "0.3"

[dependencies.bio]
version = "0.30"

[dependencies.bio-types]
version = "0.5"

[dependencies.bird_tool_utils]
version = "0.1.0"

[dependencies.clap]
version = "2"

[dependencies.coverm]
version = "0.4"

[dependencies.csv]
version = "1"

[dependencies.derive-new]
version = "0.5"

[dependencies.derive_builder]
version = "0.9"

[dependencies.env_logger]
version = "0.6"

[dependencies.itertools]
version = "0.8"

[dependencies.lazy_static]
version = "1.3.0"

[dependencies.linregress]
version = "0.1.6"

[dependencies.log]
version = "0.4"

[dependencies.ndarray]
version = "0.13"
features = ["rayon"]

[dependencies.ndarray-linalg]
version = "0.12"

[dependencies.nix]
version = "0.13"

[dependencies.nymph]
version = "0.1"

[dependencies.openblas-src]
version = "0.7"

[dependencies.ordered-float]
version = "1"

[dependencies.pest]
version = "2"

[dependencies.pest_derive]
version = "2"

[dependencies.rand]
version = "0.6"

[dependencies.rayon]
version = "1.2"

[dependencies.rust-htslib]
version = "0.26"

[dependencies.seq_io]
version = "0.3.*"

[dependencies.serde]
version = "1"

[dependencies.serde_derive]
version = "1"

[dependencies.serde_json]
version = "1"

[dependencies.serde_yaml]
version = "0.8"

[dependencies.statrs]
version = "0.11"

[dependencies.strum]
version = "0.17.1"

[dependencies.strum_macros]
version = "0.17.1"

[dependencies.tempdir]
version = "0.3"

[dependencies.tempfile]
version = "3.0"
[dev-dependencies.assert_cli]
version = "0.6"

[features]