# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.75.0"
name = "mehari"
version = "0.30.1"
authors = ["Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>"]
build = "build.rs"
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Variant effect prediction all in Rust"
readme = "README.md"
license = "MIT"
repository = "https://github.com/varfish-org/mehari"

[package.metadata.docs.rs]
all-features = true

[profile.dev]
opt-level = 3
lto = false
codegen-units = 128
debug = 2

[profile.dev.package.insta]
opt-level = 3

[profile.dev.package.similar]
opt-level = 3

[profile.profiling]
debug = 2
inherits = "release"

[profile.release]
lto = "fat"
codegen-units = 1
debug = 0

[lib]
name = "mehari"
path = "src/lib.rs"

[[bin]]
name = "mehari"
path = "src/main.rs"

[dependencies.actix-web]
version = "4.9"

[dependencies.annonars]
version = "0.41.3"

[dependencies.anyhow]
version = "1.0"

[dependencies.async-compression]
version = "0.4"
features = [
    "tokio",
    "gzip",
]

[dependencies.bgzip]
version = "0.3"

[dependencies.bio]
version = "2.0.3"

[dependencies.biocommons-bioutils]
version = "0.1.4"

[dependencies.built]
version = "0.7"
features = [
    "chrono",
    "semver",
]

[dependencies.byte-unit]
version = "5.1"

[dependencies.byteorder]
version = "1.4"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.clap-verbosity-flag]
version = "2.2"

[dependencies.coz]
version = "0.1.3"

[dependencies.csv]
version = "1.3"

[dependencies.derivative]
version = "2.2"

[dependencies.derive-new]
version = "0.7.0"

[dependencies.derive_builder]
version = "0.20"
features = ["clippy"]

[dependencies.dhat]
version = "0.3.3"

[dependencies.enumflags2]
version = "0.7.10"
features = ["serde"]

[dependencies.env_logger]
version = "0.11"

[dependencies.flate2]
version = "1.0"

[dependencies.futures]
version = "0.3"

[dependencies.hgvs]
version = "0.17.3"

[dependencies.indexmap]
version = "2.6"
features = ["serde"]

[dependencies.indicatif]
version = "0.17"
features = ["rayon"]

[dependencies.itertools]
version = "0.13"

[dependencies.jsonl]
version = "4.0"

[dependencies.log]
version = "0.4"

[dependencies.nom]
version = "7.1"

[dependencies.noodles]
version = "0.77.0"
features = [
    "async",
    "bgzf",
    "core",
    "vcf",
    "bcf",
    "csi",
    "fasta",
    "tabix",
]

[dependencies.nutype]
version = "0.5.0"
features = ["serde"]

[dependencies.once_cell]
version = "1.20.2"

[dependencies.parse-display]
version = "0.10"

[dependencies.pbjson]
version = "0.7"

[dependencies.pbjson-types]
version = "0.7"

[dependencies.percent-encoding]
version = "2.3"

[dependencies.procfs]
version = "0.17"

[dependencies.prost]
version = "0.13.3"

[dependencies.quick_cache]
version = "0.6.9"

[dependencies.rand]
version = "0.8"

[dependencies.rand_core]
version = "0.6"

[dependencies.rayon]
version = "1.10.0"

[dependencies.rocksdb]
version = "0.22.0"
features = ["multi-threaded-cf"]

[dependencies.rustc-hash]
version = "2.0.0"

[dependencies.seqrepo]
version = "0.10.2"
features = ["cached"]

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.serde_with]
version = "3.11"
features = [
    "alloc",
    "macros",
    "indexmap_2",
]
default-features = false

[dependencies.serde_yaml]
version = "0.9"

[dependencies.strum]
version = "0.26"
features = ["derive"]

[dependencies.tempfile]
version = "3"

[dependencies.thousands]
version = "0.2"

[dependencies.tokio]
version = "1.41"
features = ["full"]

[dependencies.tracing]
version = "0.1"
features = ["log"]

[dependencies.tracing-subscriber]
version = "0.3"

[dependencies.utoipa]
version = "4.2.3"
features = [
    "actix_extras",
    "chrono",
    "indexmap",
    "openapi_extensions",
    "preserve_order",
    "yaml",
]

[dependencies.utoipa-actix-web]
version = "0.1.2"

[dependencies.utoipa-swagger-ui]
version = "7.0.1"
features = ["actix-web"]

[dependencies.uuid]
version = "1.11"
features = [
    "fast-rng",
    "serde",
]

[dependencies.zstd]
version = "0.13"

[dev-dependencies.async-std]
version = "1.13"
features = ["attributes"]

[dev-dependencies.criterion]
version = "0.5.1"
features = ["async_tokio"]

[dev-dependencies.csv]
version = "1.3"

[dev-dependencies.hxdmp]
version = "0.2"

[dev-dependencies.insta]
version = "1.41"
features = ["yaml"]

[dev-dependencies.pprof]
version = "0.13.0"
features = ["flamegraph"]

[dev-dependencies.pretty_assertions]
version = "1.4"

[dev-dependencies.rstest]
version = "0.23"

[dev-dependencies.temp_testdir]
version = "0.2"

[dev-dependencies.tracing-test]
version = "0.2"

[build-dependencies.anyhow]
version = "1.0"

[build-dependencies.built]
version = "0.7"
features = [
    "cargo-lock",
    "dependency-tree",
    "git2",
    "chrono",
    "semver",
]

[build-dependencies.pbjson-build]
version = "0.7.0"

[build-dependencies.prost-build]
version = "0.13.3"

[features]
default = []
dhat-heap = []
documentation = []