/*************************************************************************** * tests/stream/test_naive_transpose.cpp * * Part of the STXXL. See http://stxxl.sourceforge.net * * Copyright (C) 2010 Andreas Beckmann * * Distributed under the Boost Software License, Version 1.0. * (See accompanying file LICENSE_1_0.txt or copy at * http://www.boost.org/LICENSE_1_0.txt) **************************************************************************/ //! \example stream/test_naive_transpose.cpp //! This is an example of how to use some basic algorithms from the //! stream package. The example transposes a 2D-matrix which is serialized //! as an 1D-vector. //! //! This transpose implementation is trivial, not neccessarily fast or //! efficient. There are more sophisticated and faster algorithms for external //! memory matrix transpostion than sorting, see e.g. J.S. Vitter: Algorithms //! and Data Structures for External Memory, Chapter 7.2. #include #include #include #include class streamop_matrix_transpose { unsigned cut, repeat; unsigned pos; public: typedef unsigned value_type; streamop_matrix_transpose(unsigned cut, unsigned repeat) : cut(cut), repeat(repeat), pos(0) { } value_type operator * () const { return (pos % cut) * repeat + pos / cut; } streamop_matrix_transpose& operator ++ () { ++pos; return *this; } bool empty() const { return pos == (cut * repeat); } }; template struct cmp_tuple_first : std::binary_function { typedef T value_type; typedef typename value_type::first_type first_value_type; bool operator () (const value_type& a, const value_type& b) const { return a.first < b.first; } value_type min_value() const { return value_type(std::numeric_limits::min(), 0); } value_type max_value() const { return value_type(std::numeric_limits::max(), 0); } }; template void dump_upper_left(const Vector& v, unsigned rows, unsigned cols, unsigned nx, unsigned ny) { int w = 5; // assumes row-major layout in the vector serialization of the matrix for (unsigned y = 0; y < ny && y < rows; ++y) { std::cout << std::setw(w) << y << ":"; for (unsigned x = 0; x < nx && x < cols; ++x) std::cout << " " << std::setw(w) << v[y * cols + x]; if (nx < cols) std::cout << " ..."; std::cout << std::endl; } if (ny < rows) std::cout << std::setw(w) << "..." << std::endl; std::cout << std::endl; } int main() { unsigned num_cols = 10000; unsigned num_rows = 5000; // buffers for streamify and materialize, // block size matches the block size of the input/output vector size_t numbuffers = 2 * stxxl::config::get_instance()->disks_number(); // RAM to be used for sorting (in bytes) size_t memory_for_sorting = 1 << 28; /////////////////////////////////////////////////////////////////////// typedef stxxl::VECTOR_GENERATOR::result array_type; array_type input(num_rows * num_cols); array_type output(num_cols * num_rows); // fill the input array with some values for (unsigned i = 0; i < num_rows * num_cols; ++i) input[i] = i; std::cout << "Before transpose:" << std::endl; dump_upper_left(input, num_rows, num_cols, 10, 10); stxxl::stats_data stats_before(*stxxl::stats::get_instance()); // HERE streaming part begins (streamifying) // create input stream typedef stxxl::stream::streamify_traits::stream_type input_stream_type; input_stream_type input_stream = stxxl::stream::streamify(input.begin(), input.end(), numbuffers); // create stream of destination indices typedef streamop_matrix_transpose destination_index_stream_type; destination_index_stream_type destination_index_stream(num_cols, num_rows); // create tuple stream: (key, value) typedef stxxl::stream::make_tuple tuple_stream_type; tuple_stream_type tuple_stream(destination_index_stream, input_stream); // sort tuples by first entry (key) typedef cmp_tuple_first cmp_type; typedef stxxl::stream::sort sorted_tuple_stream_type; sorted_tuple_stream_type sorted_tuple_stream(tuple_stream, cmp_type(), memory_for_sorting); // discard the key we used for sorting, keep second entry of the tuple only (value) typedef stxxl::stream::choose sorted_element_stream_type; sorted_element_stream_type sorted_element_stream(sorted_tuple_stream); // HERE streaming part ends (materializing) array_type::iterator o = stxxl::stream::materialize(sorted_element_stream, output.begin(), output.end(), numbuffers); STXXL_CHECK(o == output.end()); STXXL_CHECK(sorted_element_stream.empty()); stxxl::stats_data stats_after(*stxxl::stats::get_instance()); std::cout << "After transpose:" << std::endl; dump_upper_left(output, num_cols, num_rows, 10, 10); std::cout << "I/O stats (streaming part only!)" << std::endl << (stats_after - stats_before); return 0; } // vim: et:ts=4:sw=4