# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "mudskipper"
version = "0.1.0"
description = "Convert genomic alignments to transcriptomic BAM/RAD files."
homepage = "https://github.com/OceanGenomics/mudskipper"
readme = "README.md"
license-file = "LICENSE"
repository = "https://github.com/OceanGenomics/mudskipper"
[dependencies.bio]
version = "0.39.1"

[dependencies.bio-types]
version = "0.12.1"

[dependencies.clap]
version = "~2.34.0"

[dependencies.coitrees]
version = "0.2.1"

[dependencies.env_logger]
version = "0.9.0"

[dependencies.fnv]
version = "1.0.7"

[dependencies.indicatif]
version = "0.16.2"

[dependencies.libradicl]
version = "=0.4.1"

[dependencies.linecount]
version = "0.1.0"

[dependencies.log]
version = "0.4.14"

[dependencies.num_cpus]
version = "1.13.0"

[dependencies.rust-htslib]
version = "0.38.2"
features = ["bzip2", "lzma", "serde_feature"]
default-features = false