@HD VN:1.4 @SQ SN:NC_007131.7 LN:55201332 @PG ID:STAR PN:STAR VN:2.7.9a CL:STAR-2.7.9a/bin/Linux_x86_64/STAR --runThreadN 24 --genomeDir d_rerio/NC_007112.7_star_index/ --readFilesIn SRR14551647/top_10K_1.fastq SRR14551647/top_10K_2.fastq --outFileNamePrefix d_rerio/star_NC_007112.7_paired_quant/ --quantMode TranscriptomeSAM @PG ID:samtools PN:samtools PP:STAR VN:1.10 CL:samtools view -H /home/mohsen/d_rerio/star_NC_007112.7_paired_quant/Aligned.out.sam @PG ID:samtools.1 PN:samtools PP:samtools VN:1.10 CL:samtools view -H tests/NC_007120.7_12427.sam @CO user command line: STAR-2.7.9a/bin/Linux_x86_64/STAR --genomeDir d_rerio/NC_007112.7_star_index/ --runThreadN 24 --readFilesIn SRR14551647/top_10K_1.fastq SRR14551647/top_10K_2.fastq --outFileNamePrefix d_rerio/star_NC_007112.7_paired_quant/ --quantMode TranscriptomeSAM J00153:160:HMTNMBBXX:6:1101:14905:6185 163 NC_007131.7 15026858 255 103M93N47M = 15027431 2549 TAGACATCGGTGGACCCATGGCTGAACGCTGCACCCCTCCAGGAAAAGAGTTTGCATGGGGTGGACGTACCAGTGGAGACACCATGTTGGCTTGAGACAACATCTGTGGATTGAACTGTCCTGGAAAGTGTTGGGCTATGCGCATTCCTG AAFFFJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJJJJJJAJJ