# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "mzdeisotoper"
version = "0.2.2"
build = false
exclude = [
    "tests/",
    "tmp/",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Deisotoping and charge state deconvolution of mass spectrometry files"
documentation = "https://docs.rs/mzdeisotoper"
readme = "README.md"
keywords = [
    "mass-spectrometry",
    "deisotoping",
    "charge-deconvolution",
]
categories = [
    "science",
    "science::bioinformatics::proteomics",
]
license = "Apache-2.0"
repository = "https://github.com/mobiusklein/mzdeisotope"

[lib]
name = "mzdeisotoper"
path = "src/lib.rs"

[[bin]]
name = "mzdeisotoper"
path = "src/main.rs"

[dependencies.clap]
version = "4.5.9"
features = ["derive"]

[dependencies.crossbeam-channel]
version = "0.5.13"

[dependencies.figment]
version = "0.10.15"
features = [
    "env",
    "toml",
]

[dependencies.flate2]
version = "1.0.28"

[dependencies.itertools]
version = "0.12.0"

[dependencies.mzdata]
version = ">=0.39.0"
features = [
    "mzsignal",
    "nalgebra",
]
default-features = false

[dependencies.mzdeisotope]
version = "0.2.2"

[dependencies.mzpeaks]
version = ">=0.23.0,<1.0.0"

[dependencies.rayon]
version = "1.7.0"

[dependencies.serde]
version = "1.0.197"
features = ["derive"]

[dependencies.thiserror]
version = "2.0.2"

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-appender]
version = "0.2.3"

[dependencies.tracing-log]
version = "0.2.0"

[dependencies.tracing-subscriber]
version = "0.3.18"
features = [
    "env-filter",
    "fmt",
    "chrono",
]

[dev-dependencies.assert_cmd]
version = "2.0.13"

[dev-dependencies.predicates]
version = "3.1.0"

[features]
default = ["zlib-ng-compat"]
miniz_oxide = ["mzdata/miniz_oxide"]
mzmlb = ["mzdata/mzmlb"]
thermo = ["mzdata/thermo"]
zlib = ["mzdata/zlib"]
zlib-ng-compat = ["mzdata/zlib-ng-compat"]