[[valid]] filename = "aster.fasta" origin = "BioPython" tags = ["protein"] [[valid]] filename = "centaurea.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "EFTU_BACSU.fasta" origin = "Bioruby" tags = ["protein"] [[valid]] filename = "example1.txt" origin = "Bioruby" tags = ["dna"] comments =["some sequences contain gaps (labelled as 'cutpoints')"] [[valid]] filename = "example2.txt" origin = "Bioruby" tags = ["dna"] comments = ["masked sequence delineated by upper/lowercase"] [[valid]] filename = "elderberry.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "f001.fasta" origin = "BioPython" tags = ["protein"] [[valid]] filename = "f002.fasta" origin = "BioPython" tags = ["dna", "multi"] [[valid]] filename = "f003.fasta" origin = "BioPython" tags = ["dna", "multi", "comments"] [[valid]] filename = "fa01.fasta" origin = "BioPython" tags = ["protein", "gaps"] [[valid]] filename = "lavender.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "loveliesbleeding.fasta" origin = "BioPython" tags = ["protein"] [[valid]] filename = "lupine.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "phlox.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "rose.fasta" origin = "BioPython" tags = ["protein"] [[valid]] filename = "rosemary.fasta" origin = "BioPython" tags = ["protein"] [[valid]] filename = "sweetpea.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "wisteria.fasta" origin = "BioPython" tags = ["dna"] [[valid]] filename = "alnfile.fasta" origin = "BioPerl" tags = ["protein"] [[valid]] filename = "genomic-seq.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "hs_owlmonkey.fasta" origin = "BioPerl" tags = ["dna", "gaps"] [[valid]] filename = "test.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "testaln.fasta" origin = "BioPerl" tags = ["protein", "multi", "gaps"] [[valid]] filename = "testaln2.fasta" origin = "BioPerl" tags = ["protein", "multi", "gaps"] [[valid]] filename = "AAC12660.fasta" origin = "BioPerl" tags = ["protein"] [[valid]] filename = "HUMBETGLOA.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "amino.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "amino.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "badfasta.fasta" origin = "BioPerl" tags = ["dna", "multi"] comments = ["BioPerl suggests that this is invalid due to blank lines."] [[valid]] filename = "bug2901.fasta" origin = "BioPerl" tags = ["dna", "gaps"] [[valid]] filename = "cysprot.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "cysprot1.fasta" origin = "BioPerl" tags = ["protein"] [[valid]] filename = "cysprot1a.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "cysprot1b.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "dna1.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "dna2.fasta" origin = "BioPerl" tags = ["dna", "multi"] [[valid]] filename = "dnaE-bsub-prot.fasta" origin = "BioPerl" tags = ["protein"] [[valid]] filename = "dnaE-bsub.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "ecolitst.fasta" origin = "BioPerl" tags = ["protein"] [[valid]] filename = "forward_primer.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "forward_reverse_primers.fasta" origin = "BioPerl" tags = ["dna", "ambiguity"] [[valid]] filename = "multi_1.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "multi_2.fasta" origin = "BioPerl" tags = ["protein", "multi"] [[valid]] filename = "pictogram.fasta" origin = "BioPerl" tags = ["dna", "multi"] [[valid]] filename = "primedseq.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "spaced_fasta.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "spaced_fasta.fasta" origin = "BioPerl" tags = ["dna"] [[valid]] filename = "P02456.fasta" origin = "UniProt" tags = ["protein", "ambiguity"]