use needletail::parse_fastx_file; const TEST_FILES: [&str; 3] = [ "./tests/data/test.fa.gz", "./tests/data/test.fa.bz2", "./tests/data/test.fa.xz", ]; #[cfg(feature = "compression")] #[test] fn can_read_compressed_files_automatically() { use needletail::parser::Format; for p in &TEST_FILES { let mut reader = parse_fastx_file(p).unwrap(); let mut i = 0; while let Some(record) = reader.next() { let seq = record.unwrap(); assert_eq!(seq.format(), Format::Fasta); match i { 0 => { assert_eq!(seq.id(), b"test"); assert_eq!(seq.raw_seq(), b"AGCTGATCGA"); assert_eq!(seq.qual(), None); } 1 => { assert_eq!(seq.id(), b"test2"); assert_eq!(seq.raw_seq(), b"TAGC"); assert_eq!(seq.qual(), None); } _ => unreachable!("Too many records"), } i += 1; } assert_eq!(i, 2); } } #[cfg(not(feature = "compression"))] #[test] fn errors_on_compressed_files() { for p in &TEST_FILES { assert!(parse_fastx_file(p).is_err()); } }