# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "needletail"
version = "0.6.1"
authors = [
    "Roderick Bovee <rbovee@gmail.com>",
    "Vincent Prouillet <vincent@onecodex.com>",
]
build = false
include = [
    "src/**/*",
    "tests/**/*",
    "LICENSE",
    "README.md",
    "CHANGELOG.md",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "FASTX parsing and k-mer methods"
readme = "README.md"
keywords = [
    "FASTA",
    "FASTQ",
    "kmer",
    "bioinformatics",
]
categories = [
    "science",
    "parsing",
]
license = "MIT"
repository = "https://github.com/onecodex/needletail"

[profile.release]
lto = true

[lib]
name = "needletail"
crate-type = [
    "cdylib",
    "rlib",
]
path = "src/lib.rs"
bench = false

[[test]]
name = "format_specimens"
path = "tests/format_specimens.rs"

[[test]]
name = "test_compressed"
path = "tests/test_compressed.rs"

[[test]]
name = "test_stdin"
path = "tests/test_stdin.rs"

[dependencies.buffer-redux]
version = "1"
default-features = false

[dependencies.bytecount]
version = "0.6"
features = ["runtime-dispatch-simd"]

[dependencies.bzip2]
version = "0.4"
optional = true

[dependencies.flate2]
version = "1.0.30"
optional = true

[dependencies.liblzma]
version = "0.3.1"
optional = true

[dependencies.memchr]
version = "2.7.2"

[dependencies.pyo3]
version = "0.21.2"
optional = true

[dependencies.zstd]
version = "0.13.2"
optional = true

[dev-dependencies.assert_cmd]
version = "2"

[dev-dependencies.bio]
version = "1"

[dev-dependencies.criterion]
version = "0.5"

[dev-dependencies.escargot]
version = "0.5.0"

[dev-dependencies.predicates]
version = "3"

[dev-dependencies.seq_io]
version = "0.3"

[dev-dependencies.serde]
version = "1.0"

[dev-dependencies.serde_derive]
version = "1.0"

[dev-dependencies.tempfile]
version = "3"

[dev-dependencies.toml]
version = "0.8"

[features]
compression = [
    "bzip2",
    "flate2",
    "xz2",
    "zstd",
]
default = ["compression"]
python = ["pyo3/extension-module"]
python_test = ["pyo3"]
xz2 = ["liblzma"]