/* This is part of the netCDF package. Copyright 2018 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. This program tests fixes for bugs reported with accessing fixed-length scalar string variables and variable-length scalar string attributes from HDF5 files through the netCDF-4 API. Here's a HDF5 sample programs: http://hdf.ncsa.uiuc.edu/training/other-ex5/sample-programs/strings.c */ #include #include #include #include #define FILE_NAME "tst_h_strbug.h5" #define VS_ATT_NAME "vsatt" #define FS_ATT_NAME "fsatt" #define VS_VAR_NAME "vsvar" #define FS_VAR_NAME "fsvar" #define V1D_VAR_NAME "v1dvar" #define FSTR_LEN 20 #define DIM1 4 #define RANK 1 int main() { char *vs = "variable-length string"; char fsdata[] = "fixed-length string"; char *v1ddata[DIM1] = {"strings","of","variable","length"}; int i; printf("\n*** Creating file for checking fix to bugs in accessing strings from HDF5 non-netcdf-4 file.\n"); { hid_t fileid, scalar_spaceid, vstypeid, fstypeid, vsattid, fsattid, vsdsetid, fsdsetid; size_t type_size = FSTR_LEN; hid_t v1ddsetid; hid_t v1dspaceid; hsize_t dims[1] = {DIM1}; if ((scalar_spaceid = H5Screate(H5S_SCALAR)) < 0) ERR; if ((v1dspaceid = H5Screate_simple(RANK, dims, NULL)) < 0) ERR; /* Create variable-length and fixed-length string types. */ if ((vstypeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(vstypeid, H5T_VARIABLE) < 0) ERR; if ((fstypeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(fstypeid, type_size) < 0) ERR; /* Create new file, using default properties. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; /* Create scalar datasets of variable- and fixed-length strings. */ if ((vsdsetid = H5Dcreate1 (fileid, VS_VAR_NAME, vstypeid, scalar_spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Dwrite (vsdsetid, vstypeid, H5S_ALL, H5S_ALL, H5P_DEFAULT, &vs)) ERR; if ((fsdsetid = H5Dcreate1 (fileid, FS_VAR_NAME, fstypeid, scalar_spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Dwrite (fsdsetid, fstypeid, H5S_ALL, H5S_ALL, H5P_DEFAULT, &fsdata)) ERR; /* Create 1D dataset of variable-length strings. */ if ((v1ddsetid = H5Dcreate1 (fileid, V1D_VAR_NAME, vstypeid, v1dspaceid, H5P_DEFAULT)) < 0) ERR; if (H5Dwrite (v1ddsetid, vstypeid, H5S_ALL, H5S_ALL, H5P_DEFAULT, &v1ddata)) ERR; /* Write scalar global attributes of these types. */ if ((vsattid = H5Acreate1(fileid, VS_ATT_NAME, vstypeid, scalar_spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(vsattid, vstypeid, &vs) < 0) ERR; if ((fsattid = H5Acreate1(fileid, FS_ATT_NAME, fstypeid, scalar_spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(fsattid, fstypeid, &fsdata) < 0) ERR; /* Close up. */ if (H5Aclose(vsattid) < 0) ERR; if (H5Aclose(fsattid) < 0) ERR; if (H5Sclose(scalar_spaceid) < 0) ERR; if (H5Sclose(v1dspaceid) < 0) ERR; if (H5Tclose(vstypeid) < 0) ERR; if (H5Tclose(fstypeid) < 0) ERR; if (H5Dclose(vsdsetid) < 0) ERR; if (H5Dclose(fsdsetid) < 0) ERR; if (H5Dclose(v1ddsetid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } printf("*** Checking reading variable-length HDF5 string var through netCDF-4 API..."); { int ncid, varid, ndims; nc_type type; char *data_in; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, VS_VAR_NAME, &varid)) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_STRING) ERR; if (nc_inq_varndims(ncid, varid, &ndims )) ERR; if (ndims != 0) ERR; if (nc_get_var_string(ncid, varid, &data_in)) ERR; if (strcmp(vs, data_in)) ERR; if (nc_free_string(1, &data_in)) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Checking reading fixed-length HDF5 string var through netCDF-4 API..."); { int ncid, varid, ndims; nc_type type; char *data_in; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, FS_VAR_NAME, &varid)) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_STRING) ERR; if (nc_inq_varndims(ncid, varid, &ndims )) ERR; if (ndims != 0) ERR; if (nc_get_var_string(ncid, varid, &data_in)) ERR; if (strcmp(fsdata, data_in)) ERR; if (nc_free_string(1, &data_in)) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Checking reading variable-length HDF5 string att through netCDF-4 API..."); { int ncid; nc_type type; size_t len; char *data_in; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_att(ncid, NC_GLOBAL, VS_ATT_NAME, &type, &len)) ERR; if (type != NC_STRING) ERR; if (len != 1) ERR; if (nc_get_att_string(ncid, NC_GLOBAL, VS_ATT_NAME, &data_in)) ERR; if (strcmp(vs, data_in)) ERR; if (nc_free_string(1, &data_in)) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Checking reading fixed-length HDF5 string att through netCDF-4 API..."); { int ncid; nc_type type; size_t len; char *data_in; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_att(ncid, NC_GLOBAL, FS_ATT_NAME, &type, &len)) ERR; if (type != NC_CHAR) ERR; if (len != FSTR_LEN) ERR; if (!(data_in = malloc(len))) ERR; /* if (nc_get_att_string(ncid, NC_GLOBAL, FS_ATT_NAME, &data_in)) ERR; */ if (nc_get_att_text(ncid, NC_GLOBAL, FS_ATT_NAME, data_in)) ERR; if (strcmp(fsdata, data_in)) ERR; free(data_in); if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Checking reading variable-length HDF5 strings var through netCDF-4 API..."); { int ncid, varid, ndims; nc_type type; int *dimids; size_t nstrings; char **data_in; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, V1D_VAR_NAME, &varid)) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_STRING) ERR; if (nc_inq_varndims(ncid, varid, &ndims )) ERR; if (ndims != RANK) ERR; if (!(dimids = malloc(ndims * sizeof(int)))) ERR; if (nc_inq_vardimid(ncid, varid, dimids)) ERR; if (nc_inq_dimlen(ncid, dimids[0], &nstrings)) ERR; if (!(data_in = (char **)malloc(nstrings * sizeof(char *)))) ERR; if (nc_get_var_string(ncid, varid, data_in)) ERR; for (i = 0; i < nstrings; i++) { if(strcmp(v1ddata[i], data_in[i])) ERR; } if (nc_free_string(nstrings, data_in)) ERR; free(data_in); free(dimids); if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; FINAL_RESULTS; }