# See ftp://ftp.ncbi.nlm.nih.gov/genomes/README_assembly_summary.txt for a description of the columns in this file. # assembly_accession bioproject biosample wgs_master refseq_category taxid species_taxid organism_name infraspecific_name isolate version_status assembly_level release_type genome_rep seq_rel_date asm_name submitter gbrs_paired_asm paired_asm_comp ftp_path excluded_from_refseq relation_to_type_material asm_not_live_date GCF_000001215.4 PRJNA164 SAMN02803731 reference genome 7227 7227 Drosophila melanogaster latest Chromosome Major Full 2014/08/01 Release 6 plus ISO1 MT The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics GCA_000001215.4 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT na GCF_000001405.39 PRJNA168 reference genome 9606 9606 Homo sapiens latest Chromosome Patch Full 2019/02/28 GRCh38.p13 Genome Reference Consortium GCA_000001405.28 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13 na GCF_000001635.27 PRJNA169 reference genome 10090 10090 Mus musculus latest Chromosome Major Full 2020/06/24 GRCm39 Genome Reference Consortium GCA_000001635.9 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.27_GRCm39 na GCF_000001735.4 PRJNA116 SAMN03081427 reference genome 3702 3702 Arabidopsis thaliana ecotype=Columbia latest Chromosome Minor Full 2018/03/15 TAIR10.1 The Arabidopsis Information Resource (TAIR) GCA_000001735.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/735/GCF_000001735.4_TAIR10.1 na GCF_000001905.1 PRJNA70973 SAMN02953622 AAGU00000000.3 representative genome 9785 9785 Loxodonta africana ISIS603380 latest Scaffold Major Full 2009/07/15 Loxafr3.0 Broad Institute GCA_000001905.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/905/GCF_000001905.1_Loxafr3.0 na GCF_000001985.1 PRJNA32665 SAMN02953685 ABAR00000000.1 representative genome 441960 37727 Talaromyces marneffei ATCC 18224 strain=ATCC 18224 latest Scaffold Major Full 2008/10/29 JCVI-PMFA1-2.0 J. Craig Venter Institute GCA_000001985.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/985/GCF_000001985.1_JCVI-PMFA1-2.0 assembly from type material na GCF_000002035.6 PRJNA13922 SAMN06930106 reference genome 7955 7955 Danio rerio latest Chromosome Major Full 2017/05/09 GRCz11 Genome Reference Consortium GCA_000002035.4 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11 na GCF_000002075.1 PRJNA209509 SAMN02953658 AASC00000000.3 representative genome 6500 6500 Aplysia californica F4 #8 latest Scaffold Major Full 2013/05/15 AplCal3.0 Broad Institute GCA_000002075.2 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/075/GCF_000002075.1_AplCal3.0 na GCF_000002235.5 PRJNA13728 SAMN00829422 AAGJ00000000.6 representative genome 7668 7668 Strongylocentrotus purpuratus Spur 01 latest Scaffold Major Full 2019/09/06 Spur_5.0 Baylor College of Medicine GCA_000002235.4 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/235/GCF_000002235.5_Spur_5.0 na GCF_000002285.5 PRJNA12384 SAMN02953603 AAEX00000000.4 na 9615 9612 Canis lupus familiaris breed=boxer Tasha latest Chromosome Major Full 2020/10/06 Dog10K_Boxer_Tasha Dog Genome Sequencing Consortium GCA_000002285.4 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/285/GCF_000002285.5_Dog10K_Boxer_Tasha na GCF_000002295.2 PRJNA15683 SAMN02953611 AAFR00000000.3 representative genome 13616 13616 Monodelphis domestica latest Chromosome Major Full 2007/01/25 MonDom5 The Genome Sequencing Platform, The Genome Assembly Team na na https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/295/GCF_000002295.2_MonDom5 na GCF_000002335.3 PRJNA15718 SAMN02953634 AAJJ00000000.2 representative genome 7070 7070 Tribolium castaneum strain=Georgia GA2 latest Chromosome Major Full 2016/03/10 Tcas5.2 Kansas State University GCA_000002335.3 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/335/GCF_000002335.3_Tcas5.2 na GCF_000002415.2 PRJNA20431 SAMN02953638 AAKM00000000.1 representative genome 5855 5855 Plasmodium vivax Salvador I latest Chromosome Major Full 2009/05/06 ASM241v2 TIGR GCA_000002415.2 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/415/GCF_000002415.2_ASM241v2 na GCF_000002425.4 PRJNA28131 SAMN00120126 ABEU00000000.2 representative genome 3218 3218 Physcomitrium patens ecotype=Gransden 2004 latest Chromosome Major Full 2018/01/24 Phypa V3 Moss Genome Consortium GCA_000002425.2 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/425/GCF_000002425.4_Phypa_V3 na GCF_000002435.2 PRJNA15590 SAMN02952905 AACB00000000.3 representative genome 5741 5741 Giardia intestinalis strain=WB C6 latest Chromosome Major Full 2019/11/06 UU_WB_2.1 Marine Biological Laboratory GCA_000002435.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/435/GCF_000002435.2_UU_WB_2.1 na GCF_000002445.2 PRJNA15565 SAMN02953625 representative genome 185431 5691 Trypanosoma brucei brucei TREU927 strain=927/4 GUTat10.1 927/4 GUTat10.1 latest Chromosome Major Full 2005/12/14 ASM244v1 Trypanosoma brucei consortium GCA_000002445.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/445/GCF_000002445.2_ASM244v1 na GCF_000002455.1 PRJNA27939 na 227086 227086 Bigelowiella natans latest Chromosome Major Partial 2006/07/28 ASM245v1 University of Melbourne, Australia GCA_000002455.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/455/GCF_000002455.1_ASM245v1 partial na GCF_000002495.2 PRJNA1433 SAMN02953596 AACU00000000.3 representative genome 242507 318829 Pyricularia oryzae 70-15 strain=70-15 latest Chromosome Major Full 2011/10/14 MG8 International Rice Blast Genome Consortium GCA_000002495.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/495/GCF_000002495.2_MG8 na GCF_000002515.2 PRJNA12377 SAMEA3138170 representative genome 28985 28985 Kluyveromyces lactis strain=NRRL Y-1140 latest Complete Genome Major Full 2004/07/02 ASM251v1 Genolevures Consortium GCA_000002515.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/515/GCF_000002515.2_ASM251v1 na GCF_000002525.2 PRJNA12414 SAMEA3138171 representative genome 284591 4952 Yarrowia lipolytica CLIB122 strain=CLIB122 latest Chromosome Major Full 2004/07/02 ASM252v1 Genolevures Consortium GCA_000002525.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/525/GCF_000002525.2_ASM252v1 na GCF_000002545.3 PRJNA12376 SAMEA3138172 representative genome 5478 5478 [Candida] glabrata strain=CBS 138 latest Chromosome Major Full 2008/08/12 ASM254v2 Genolevures Consortium GCA_000002545.2 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/545/GCF_000002545.3_ASM254v2 assembly from type material na GCF_000002595.2 PRJNA21061 SAMN02953692 ABCN00000000.2 representative genome 3055 3055 Chlamydomonas reinhardtii strain=CC-503 cw92 mt+ latest Chromosome Major Full 2018/01/26 Chlamydomonas_reinhardtii_v5.5 DOE Joint Genome Institute GCA_000002595.3 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/595/GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5 na GCF_000002655.1 PRJNA14003 SAMN00115746 AAHF00000000.1 representative genome 330879 746128 Aspergillus fumigatus Af293 strain=Af293 latest Chromosome Major Full 2005/06/10 ASM265v1 J. Craig Venter Institute GCA_000002655.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/655/GCF_000002655.1_ASM265v1 na GCF_000002715.2 PRJNA18467 SAMN02953636 AAKD00000000.3 representative genome 344612 5057 Aspergillus clavatus NRRL 1 strain=NRRL 1 latest Scaffold Major Full 2006/12/14 ASM271v1 J. Craig Venter Institute GCA_000002715.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/715/GCF_000002715.2_ASM271v1 na GCF_000002725.2 PRJNA15564 SAMEA3138173 representative genome 347515 5664 Leishmania major strain Friedlin strain=Friedlin latest Complete Genome Major Full 2011/02/14 ASM272v2 Friedlin Consortium GCA_000002725.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/725/GCF_000002725.2_ASM272v2 na GCF_000002765.5 PRJNA148 SAMN00102897 representative genome 36329 5833 Plasmodium falciparum 3D7 3D7 latest Complete Genome Major Full 2016/04/07 GCA_000002765 Plasmodium falciparum Genome Sequencing Consortium GCA_000002765.3 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/765/GCF_000002765.5_GCA_000002765 na GCF_000002775.4 PRJNA17973 SAMN02953657 AARH00000000.3 representative genome 3694 3694 Populus trichocarpa Nisqually-1 latest Chromosome Major Full 2018/01/24 Pop_tri_v3 US DOE Joint Genome Institute (JGI GCA_000002775.3 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3 na GCF_000002825.2 PRJNA18631 SAMN02953626 AAHC00000000.1 representative genome 412133 5722 Trichomonas vaginalis G3 strain=G3; ATCC PRA-98 latest Scaffold Major Full 2007/01/11 ASM282v1 TIGR GCA_000002825.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/825/GCF_000002825.2_ASM282v1 na GCF_000002845.2 PRJNA19185 SAMEA2272271 CADA00000000.1 representative genome 420245 5660 Leishmania braziliensis MHOM/BR/75/M2904 strain=MHOM/BR/75/M2904 latest Chromosome Major Full 2011/11/07 ASM284v2 The Sanger Institute GCA_000002845.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/845/GCF_000002845.2_ASM284v2 na GCF_000002855.3 PRJNA19263 SAMEA3283178 representative genome 425011 5061 Aspergillus niger CBS 513.88 latest Scaffold Major Full 2007/04/11 ASM285v2 DSM, The Netherlands GCA_000002855.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/855/GCF_000002855.3_ASM285v2 na GCF_000002865.3 PRJNA28133 SAMN02953695 ABFJ00000000.1 representative genome 431895 81824 Monosiga brevicollis MX1 strain=MX1 latest Scaffold Major Full 2007/12/20 V1.0 DOE Joint Genome Institute GCA_000002865.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/865/GCF_000002865.3_V1.0 na GCF_000002875.2 PRJNA19187 SAMEA3138175 CACT00000000.1 representative genome 435258 5671 Leishmania infantum JPCM5 strain=JPCM5 latest Chromosome Major Full 2011/11/08 ASM287v2 The Sanger Institute GCA_000002875.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/875/GCF_000002875.2_ASM287v2 na GCF_000002945.1 PRJNA127 SAMEA3138176 representative genome 4896 4896 Schizosaccharomyces pombe strain=972h- latest Chromosome Major Full 2007/11/09 ASM294v2 S. pombe European Sequencing Consortium (EUPOM) GCA_000002945.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.1_ASM294v2 na GCF_000002975.1 PRJNA210 SAMEA3865277 na 55529 55529 Guillardia theta latest Chromosome Major Partial 2001/04/26 ASM297v1 Institute for Marine Biosciences, Halifax, Canada GCA_000002975.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/975/GCF_000002975.1_ASM297v1 partial na GCF_000002985.6 PRJNA158 SAMEA3138177 reference genome 6239 6239 Caenorhabditis elegans strain=Bristol N2 latest Complete Genome Major Full 2013/02/07 WBcel235 C. elegans Sequencing Consortium GCA_000002985.3 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235 na GCF_000002995.4 PRJNA27801 SAMEA3146321 CAAKNF000000000.1 representative genome 6279 6279 Brugia malayi strain=FR3 latest Scaffold Major Full 2019/06/02 B_malayi-4.0 WormBase group, EBI GCA_000002995.5 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/995/GCF_000002995.4_B_malayi-4.0 na GCF_000003025.6 PRJNA28993 SAMN02953785 AEMK00000000.2 representative genome 9823 9823 Sus scrofa breed=Duroc TJ Tabasco latest Chromosome Major Full 2017/02/07 Sscrofa11.1 The Swine Genome Sequencing Consortium (SGSC) GCA_000003025.6 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/025/GCF_000003025.6_Sscrofa11.1 na GCF_000003125.1 PRJNA38857 SAMN02953686 ABAS00000000.1 representative genome 441959 28564 Talaromyces stipitatus ATCC 10500 strain=ATCC 10500 latest Scaffold Major Full 2008/12/22 JCVI-TSTA1-3.0 J. Craig Venter Institute GCA_000003125.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/125/GCF_000003125.1_JCVI-TSTA1-3.0 assembly from type material na GCF_000003135.1 PRJNA224116 SAMN00001475 ACHI00000000.1 na 548480 216816 Bifidobacterium longum subsp. longum ATCC 55813 strain=ATCC 55813 latest Scaffold Major Full 2009/05/05 ASM313v1 Baylor College of Medicine GCA_000003135.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/135/GCF_000003135.1_ASM313v1 na GCF_000003195.3 PRJNA38691 SAMN02953738 ABXC00000000.3 representative genome 4558 4558 Sorghum bicolor cultivar=BTx623 latest Chromosome Major Full 2017/04/07 Sorghum_bicolor_NCBIv3 Sorghum Consortium GCA_000003195.3 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3 na GCF_000003215.1 PRJNA224116 SAMN02470531 ABFD00000000.2 na 455631 1496 Clostridioides difficile QCD-66c26 QCD-66c26 latest Chromosome Major Full 2009/01/30 ASM321v1 McGill University GCA_000003215.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/215/GCF_000003215.1_ASM321v1 na GCF_000003225.4 PRJNA16308 SAMEA3138180 representative genome 5874 5874 Theileria annulata strain=Ankara isolate clone C9 latest Chromosome Major Full 2005/07/29 ASM322v1 The Sanger Institute GCA_000003225.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/225/GCF_000003225.4_ASM322v1 na GCF_000003515.1 PRJNA39807 SAMN02953631 AAIW00000000.1 representative genome 336963 33188 Uncinocarpus reesii 1704 strain=1704 latest Scaffold Major Full 2009/05/21 ASM351v2 Broad Institute GCA_000003515.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/515/GCF_000003515.1_ASM351v2 na GCF_000003525.1 PRJNA319322 SAMN02953741 ACBT00000000.1 representative genome 559297 5039 Blastomyces dermatitidis ER-3 strain=ER-3 latest Scaffold Major Full 2009/02/24 BD_ER3_V1 Broad Institute GCA_000003525.2 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/525/GCF_000003525.1_BD_ER3_V1 na GCF_000003605.2 PRJNA42857 SAMN00102747 ACQM00000000.1 representative genome 10224 10224 Saccoglossus kowalevskii latest Scaffold Major Full 2009/09/09 Skow_1.1 Baylor College of Medicine GCA_000003605.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/605/GCF_000003605.2_Skow_1.1 na GCF_000003625.3 PRJNA42933 SAMN02953624 AAGW00000000.2 representative genome 9986 9986 Oryctolagus cuniculus breed=Thorbecke inbred latest Chromosome Major Full 2009/10/20 OryCun2.0 The Broad Institute of MIT and Harvard GCA_000003625.1 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/625/GCF_000003625.3_OryCun2.0 na GCF_000003645.1 PRJNA224116 SAMN00717290 ACLS00000000.1 na 526973 1396 Bacillus cereus m1293 strain=m1293 latest Chromosome Major Full 2009/05/29 ASM364v1 Naval Medical Research Center GCA_000003645.1 identical https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/645/GCF_000003645.1_ASM364v1 na GCF_000003745.3 PRJNA33471 SAMEA2272750 CAAP00000000.3 representative genome 29760 29760 Vitis vinifera cultivar=PN40024 latest Chromosome Minor Full 2009/12/07 12X International Grape Genome Program GCA_000003745.2 different https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/745/GCF_000003745.3_12X na