#ifndef __OPENMM_OPENCLFFT3D_H__ #define __OPENMM_OPENCLFFT3D_H__ /* -------------------------------------------------------------------------- * * OpenMM * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2009-2015 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * This program is free software: you can redistribute it and/or modify * * it under the terms of the GNU Lesser General Public License as published * * by the Free Software Foundation, either version 3 of the License, or * * (at your option) any later version. * * * * This program is distributed in the hope that it will be useful, * * but WITHOUT ANY WARRANTY; without even the implied warranty of * * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * * GNU Lesser General Public License for more details. * * * * You should have received a copy of the GNU Lesser General Public License * * along with this program. If not, see . * * -------------------------------------------------------------------------- */ #include "OpenCLArray.h" namespace OpenMM { /** * This class performs three dimensional Fast Fourier Transforms. It is based on the * mixed radix algorithm described in *

* Takahashi, D. and Kanada, Y., "High-Performance Radix-2, 3 and 5 Parallel 1-D Complex * FFT Algorithms for Distributed-Memory Parallel Computers." Journal of Supercomputing, * 15, 207–228 (2000). *

* This class places certain restrictions on the allowed dimensions of the grid. First, * the size of each dimension may have no prime factors other than 2, 3, 5, and 7. You * can call findLegalDimension() to determine the smallest size that satisfies this * requirement and is greater than or equal to a specified minimum size. Second, the size * of each dimension must be small enough to compute each 1D transform entirely in local * memory with one work unit per data point. This will vary between platforms, but is * typically at least 512. *

* Note that this class performs an unnormalized transform. That means that if you perform * a forward transform followed immediately by an inverse transform, the effect is to * multiply every value of the original data set by the total number of data points. */ class OPENMM_EXPORT_OPENCL OpenCLFFT3D { public: /** * Create an OpenCLFFT3D object for performing transforms of a particular size. * * @param context the context in which to perform calculations * @param xsize the first dimension of the data sets on which FFTs will be performed * @param ysize the second dimension of the data sets on which FFTs will be performed * @param zsize the third dimension of the data sets on which FFTs will be performed * @param realToComplex if true, a real-to-complex transform will be done. Otherwise, it is complex-to-complex. */ OpenCLFFT3D(OpenCLContext& context, int xsize, int ysize, int zsize, bool realToComplex=false); /** * Perform a Fourier transform. The transform cannot be done in-place: the input and output * arrays must be different. Also, the input array is used as workspace, so its contents * are destroyed. This also means that both arrays must be large enough to hold complex values, * even when performing a real-to-complex transform. *

* When performing a real-to-complex transform, the output data is of size xsize*ysize*(zsize/2+1) * and contains only the non-redundant elements. * * @param in the data to transform, ordered such that in[x*ysize*zsize + y*zsize + z] contains element (x, y, z) * @param out on exit, this contains the transformed data * @param forward true to perform a forward transform, false to perform an inverse transform */ void execFFT(OpenCLArray& in, OpenCLArray& out, bool forward = true); /** * Get the smallest legal size for a dimension of the grid (that is, a size with no prime * factors other than 2, 3, 5, and 7). * * @param minimum the minimum size the return value must be greater than or equal to */ static int findLegalDimension(int minimum); private: cl::Kernel createKernel(int xsize, int ysize, int zsize, int& threads, int axis, bool forward, bool inputIsReal); int xsize, ysize, zsize; int xthreads, ythreads, zthreads; bool packRealAsComplex; OpenCLContext& context; cl::Kernel xkernel, ykernel, zkernel; cl::Kernel invxkernel, invykernel, invzkernel; cl::Kernel packForwardKernel, unpackForwardKernel, packBackwardKernel, unpackBackwardKernel; }; } // namespace OpenMM #endif // __OPENMM_OPENCLFFT3D_H__