/* Portions copyright (c) 2009-2013 Stanford University and Simbios. * Contributors: Peter Eastman * * Permission is hereby granted, free of charge, to any person obtaining * a copy of this software and associated documentation files (the * "Software"), to deal in the Software without restriction, including * without limitation the rights to use, copy, modify, merge, publish, * distribute, sublicense, and/or sell copies of the Software, and to * permit persons to whom the Software is furnished to do so, subject * to the following conditions: * * The above copyright notice and this permission notice shall be included * in all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS * OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. * IN NO EVENT SHALL THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE * LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION * OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION * WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #ifndef __ReferenceConstraintAlgorithm_H__ #define __ReferenceConstraintAlgorithm_H__ #include "openmm/Vec3.h" #include "openmm/internal/windowsExport.h" #include "SimTKOpenMMRealType.h" #include namespace OpenMM { /** * This abstract class defines the interface which constraint algorithms must implement. */ class OPENMM_EXPORT ReferenceConstraintAlgorithm { public: virtual ~ReferenceConstraintAlgorithm() {}; /** * Apply the constraint algorithm. * * @param atomCoordinates the original atom coordinates * @param atomCoordinatesP the new atom coordinates * @param inverseMasses 1/mass * @param tolerance the constraint tolerance */ virtual void apply(std::vector& atomCoordinates, std::vector& atomCoordinatesP, std::vector& inverseMasses, double tolerance) = 0; /** * Apply the constraint algorithm to velocities. * * @param atomCoordinates the atom coordinates * @param atomCoordinatesP the velocities to modify * @param inverseMasses 1/mass * @param tolerance the constraint tolerance */ virtual void applyToVelocities(std::vector& atomCoordinates, std::vector& velocities, std::vector& inverseMasses, double tolerance) = 0; }; } // namespace OpenMM #endif // __ReferenceConstraintAlgorithm_H__