/* -------------------------------------------------------------------------- * * OpenMMAmoeba * * -------------------------------------------------------------------------- * * This is part of the OpenMM molecular simulation toolkit originating from * * Simbios, the NIH National Center for Physics-Based Simulation of * * Biological Structures at Stanford, funded under the NIH Roadmap for * * Medical Research, grant U54 GM072970. See https://simtk.org. * * * * Portions copyright (c) 2010-2016 Stanford University and the Authors. * * Authors: Peter Eastman * * Contributors: * * * * Permission is hereby granted, free of charge, to any person obtaining a * * copy of this software and associated documentation files (the "Software"), * * to deal in the Software without restriction, including without limitation * * the rights to use, copy, modify, merge, publish, distribute, sublicense, * * and/or sell copies of the Software, and to permit persons to whom the * * Software is furnished to do so, subject to the following conditions: * * * * The above copyright notice and this permission notice shall be included in * * all copies or substantial portions of the Software. * * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL * * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, * * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR * * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE * * USE OR OTHER DEALINGS IN THE SOFTWARE. * * -------------------------------------------------------------------------- */ #include "openmm/Platform.h" #include "openmm/internal/AssertionUtilities.h" #include "openmm/AmoebaGeneralizedKirkwoodForce.h" #include "openmm/serialization/XmlSerializer.h" #include #include using namespace OpenMM; using namespace std; extern "C" void registerAmoebaSerializationProxies(); void testSerialization() { // Create a Force. AmoebaGeneralizedKirkwoodForce force1; force1.setForceGroup(3); force1.setSolventDielectric( 80.0); force1.setSoluteDielectric( 1.0); //force1.setDielectricOffset( 0.09); force1.setProbeRadius( 1.40); force1.setSurfaceAreaFactor( 0.888); force1.setIncludeCavityTerm( 1); force1.addParticle(1.0, 2.0, 0.9); force1.addParticle(-1.1,2.1, 0.8); force1.addParticle(0.1, 2.2, 0.7); // Serialize and then deserialize it. stringstream buffer; XmlSerializer::serialize(&force1, "Force", buffer); AmoebaGeneralizedKirkwoodForce* copy = XmlSerializer::deserialize(buffer); // Compare the two forces to see if they are identical. AmoebaGeneralizedKirkwoodForce& force2 = *copy; ASSERT_EQUAL(force1.getForceGroup(), force2.getForceGroup()); ASSERT_EQUAL(force1.getSolventDielectric(), force2.getSolventDielectric()); ASSERT_EQUAL(force1.getSoluteDielectric(), force2.getSoluteDielectric()); //ASSERT_EQUAL(force1.getDielectricOffset(), force2.getDielectricOffset()); ASSERT_EQUAL(force1.getProbeRadius(), force2.getProbeRadius()); ASSERT_EQUAL(force1.getSurfaceAreaFactor(), force2.getSurfaceAreaFactor()); ASSERT_EQUAL(force1.getIncludeCavityTerm(), force2.getIncludeCavityTerm()); ASSERT_EQUAL(force1.getNumParticles(), force2.getNumParticles()); for (unsigned int ii = 0; ii < static_cast(force1.getNumParticles()); ii++) { double radius1, charge1, scaleFactor1; double radius2, charge2, scaleFactor2; force1.getParticleParameters(ii, charge1, radius1, scaleFactor1); force2.getParticleParameters(ii, charge2, radius2, scaleFactor2); ASSERT_EQUAL(charge1, charge2); ASSERT_EQUAL(radius1, radius2); ASSERT_EQUAL(scaleFactor1, scaleFactor2); } } int main() { try { registerAmoebaSerializationProxies(); testSerialization(); } catch(const exception& e) { cout << "exception: " << e.what() << endl; return 1; } cout << "Done" << endl; return 0; }