# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "orthanq"
version = "1.7.9"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A tool to quantify haplotypes in an uncertainty-aware manner"
readme = "README.md"
license = "MIT"

[profile.develop]
lto = false
codegen-units = 128
inherits = "release"

[profile.release]
lto = "fat"
codegen-units = 1

[lib]
name = "orthanq"
path = "src/lib.rs"

[[bin]]
name = "orthanq"
path = "src/bin/orthanq.rs"

[[test]]
name = "lib"
path = "tests/lib.rs"

[dependencies.GSL]
version = "6.0"

[dependencies.anyhow]
version = "1.0"

[dependencies.assert_approx_eq]
version = "1.1.0"

[dependencies.bio]
version = "0.41.0"

[dependencies.bio-types]
version = "0.13.0"

[dependencies.bv]
version = "0.11"

[dependencies.cached]
version = "0.26"

[dependencies.csv]
version = "1"

[dependencies.derefable]
version = "0.1"

[dependencies.derive-new]
version = "0.5"

[dependencies.derive_builder]
version = "0.10.2"

[dependencies.derive_deref]
version = "1.1.1"

[dependencies.fern]
version = "0.6"

[dependencies.futures]
version = "0.3"

[dependencies.good_lp]
version = "1.4.0"
features = ["coin_cbc"]
default-features = false

[dependencies.itertools]
version = "0.10"

[dependencies.itertools-num]
version = "0.1"

[dependencies.linfa]
version = "0.6.0"

[dependencies.linfa-clustering]
version = "0.6.0"

[dependencies.log]
version = "0.4"

[dependencies.ndarray]
version = "0.15.4"

[dependencies.ordered-float]
version = "1"
features = ["serde"]

[dependencies.petgraph]
version = "0.6.4"

[dependencies.plotters]
version = "0.3.3"

[dependencies.polars]
version = "0.22.8"

[dependencies.quick-xml]
version = "0.26.0"

[dependencies.rand_xoshiro]
version = "0.6.0"

[dependencies.rust-htslib]
version = "0.45.0"

[dependencies.seq_io]
version = "0.3.2"

[dependencies.serde]
version = "1.0.145"

[dependencies.serde_json]
version = "1.0.85"

[dependencies.smartcore]
version = "0.2.1"

[dependencies.statrs]
version = "0.15"

[dependencies.structopt]
version = "0.3"

[dependencies.tempfile]
version = "3"

[dependencies.yaml-rust]
version = ">=0.4.1,<0.5"