# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "piscem-infer"
version = "0.6.0"
authors = [
    "Rob Patro",
    "Rob Patro <rob@cs.umd.edu>",
]
include = [
    "/src/*.rs",
    "/src/utils/*.rs",
    "/Cargo.toml",
    "/Cargo.lock",
    "/README.md",
    "/LICENSE",
]
description = "A flexible tool to perform target quantification from bulk-sequencing data"
homepage = "https://piscem-infer.readthedocs.io/"
readme = "README.md"
keywords = [
    "science",
    "RNA-seq",
    "quantification",
    "RAD-file",
]
categories = [
    "command-line-utilities",
    "science",
]
license-file = "LICENSE"
repository = "https://github.com/COMBINE-lab/piscem-infer/"

[profile.dist]
lto = "thin"
inherits = "release"

[profile.release]
lto = "thin"
debug-assertions = false
panic = "abort"

[[bin]]
name = "piscem-infer"
path = "src/main.rs"

[dependencies.ahash]
version = "0.8.9"

[dependencies.anyhow]
version = "1.0.80"

[dependencies.arrow2]
version = "0.18.0"
features = [
    "io_parquet",
    "io_parquet_gzip",
    "io_parquet_zstd",
    "io_parquet_snappy",
]

[dependencies.atomic_float]
version = "0.1.0"

[dependencies.bincode]
version = "1.3.3"

[dependencies.bstr]
version = "1.9.1"

[dependencies.clap]
version = "4.5.1"
features = [
    "derive",
    "wrap_help",
    "cargo",
    "help",
    "usage",
    "error-context",
]

[dependencies.distrs]
version = "0.2.1"

[dependencies.libradicl]
version = "0.8.0"

[dependencies.num-format]
version = "0.4.4"

[dependencies.path-tools]
version = "0.1.0"

[dependencies.rand]
version = "0.8.5"

[dependencies.rand_distr]
version = "0.4.3"

[dependencies.rayon]
version = "1.8.1"

[dependencies.scroll]
version = "0.12.0"

[dependencies.serde]
version = "1.0.197"
features = [
    "serde_derive",
    "derive",
]

[dependencies.serde_derive]
version = "1.0.197"

[dependencies.serde_json]
version = "1.0.114"

[dependencies.snap]
version = "1.1.1"

[dependencies.tabled]
version = "0.15.0"

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-subscriber]
version = "0.3.18"
features = ["env-filter"]
default-features = true