[package]
name = "piscem-infer"
version = "0.6.0"
edition = "2021"
readme = "README.md"
license-file = "LICENSE"
keywords = ["science", "RNA-seq", "quantification", "RAD-file"]
categories = ["command-line-utilities", "science"]
repository = "https://github.com/COMBINE-lab/piscem-infer/"
homepage = "https://piscem-infer.readthedocs.io/"
description = "A flexible tool to perform target quantification from bulk-sequencing data"
authors = ["Rob Patro", "Rob Patro <rob@cs.umd.edu>"]
include = [
  "/src/*.rs",
  "/src/utils/*.rs",
  "/Cargo.toml",
  "/Cargo.lock",
  "/README.md",
  "/LICENSE"
]
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
libradicl = { git = "https://github.com/COMBINE-lab/libradicl", branch = "develop", version = "0.8.0" }
ahash = "0.8.9"
distrs = "0.2.1"
anyhow = "1.0.80"
bincode = "1.3.3"
bstr = "1.9.1"
clap = { version = "4.5.1", features = ["derive", "wrap_help", "cargo", "help", "usage", "error-context"] }
tracing = "0.1.40"
tracing-subscriber = { version = "0.3.18", default-features = true, features = ["env-filter"] }
tabled = "0.15.0"
rayon = "1.8.1"
rand_distr = "0.4.3"
rand = "0.8.5"
serde_json = "1.0.114"
serde_derive = "1.0.197"
serde = { version = "1.0.197", features = ["serde_derive", "derive"] }
arrow2 = { version = "0.18.0", features = ["io_parquet", "io_parquet_gzip", "io_parquet_zstd", "io_parquet_snappy"] }
scroll = "0.12.0"
snap = "1.1.1"
path-tools = "0.1.0"
atomic_float = "0.1.0"
num-format = "0.4.4"

[[bin]]
name = "piscem-infer"
path = "src/main.rs"

[profile.release]
debug-assertions = false
lto = "thin"
panic = "abort"

# The profile that 'cargo dist' will build with
[profile.dist]
inherits = "release"
lto = "thin"

# Config for 'cargo dist'
[workspace.metadata.dist]
# The preferred cargo-dist version to use in CI (Cargo.toml SemVer syntax)
cargo-dist-version = "0.10.0"
# CI backends to support
ci = ["github"]
# The installers to generate for each app
installers = ["shell"]
# Target platforms to build apps for (Rust target-triple syntax)
targets = ["aarch64-apple-darwin", "x86_64-apple-darwin", "x86_64-unknown-linux-gnu"]
# Publish jobs to run in CI
pr-run-mode = "plan"

[workspace.metadata.dist.github-custom-runners]
aarch64-apple-darwin = "macos-14"