# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "psdm"
version = "0.3.0"
authors = ["Michael Hall <michael@mbh.sh>"]
description = "Compute a pairwise SNP distance matrix from one or two alignment(s)"
homepage = "https://github.com/mbhall88/psdm"
readme = "README.md"
keywords = [
    "bioinformatics",
    "SNP",
    "matrix",
    "fasta",
    "pairwise",
]
categories = [
    "science",
    "command-line-utilities",
]
license-file = "LICENSE"
repository = "https://github.com/mbhall88/psdm"

[dependencies.anyhow]
version = "1"

[dependencies.clap]
version = "3.1"
features = ["derive"]

[dependencies.env_logger]
version = "0.11.3"

[dependencies.indicatif]
version = "0.17"
features = ["rayon"]

[dependencies.itertools]
version = "0.13"

[dependencies.log]
version = "0.4"

[dependencies.ndarray]
version = "0.15"

[dependencies.niffler]
version = "2.3"

[dependencies.noodles-fasta]
version = "0.40"

[dependencies.rayon]
version = "1.10"

[dev-dependencies.assert_cmd]
version = "2"

[dev-dependencies.tempfile]
version = "3.2"

[badges.maintenance]
status = "actively-developed"