# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "rasusa"
version = "2.1.0"
authors = ["Michael Hall <michael@mbh.sh>"]
build = false
exclude = ["tests/cases/*"]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Randomly subsample reads or alignments"
homepage = "https://github.com/mbhall88/rasusa"
readme = "README.md"
keywords = [
    "bioinformatics",
    "subsampling",
    "fastq",
    "alignment",
    "coverage",
]
categories = [
    "science",
    "command-line-utilities",
]
license-file = "LICENSE"
repository = "https://github.com/mbhall88/rasusa"

[profile.profiling]
debug = 2
inherits = "release"
strip = false

[profile.release]
strip = true

[[bin]]
name = "rasusa"
path = "src/main.rs"

[[test]]
name = "main"
path = "tests/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4.5.4"
features = ["derive"]

[dependencies.env_logger]
version = "0.11.3"

[dependencies.log]
version = "0.4"

[dependencies.needletail]
version = "0.5.1"
features = ["compression"]

[dependencies.niffler]
version = "2.5"

[dependencies.rand]
version = "0.8.5"

[dependencies.rand_pcg]
version = "0.3.1"

[dependencies.regex]
version = "1.10.4"

[dependencies.rust-htslib]
version = "0.46.0"
features = [
    "bzip2",
    "lzma",
]
default-features = false

[dependencies.thiserror]
version = "1.0"

[dev-dependencies.assert_cmd]
version = "2.0.14"

[dev-dependencies.predicates]
version = "3.1.0"

[dev-dependencies.tempfile]
version = "3.10.1"

[badges.maintenance]
status = "actively-developed"