# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "rboss"
version = "0.3.2"
authors = ["Yangyang Li <yangyang.li@northwestern.edu>"]
description = "Rust Bioinformatics Toolbox"
homepage = "https://github.com/cauliyang/rboss"
documentation = "https://github.com/cauliyang/rboss"
readme = "README.md"
keywords = [
    "Bioinformatics",
    "Graph",
    "Toolbox",
]
categories = ["command-line-interface"]
license = "MIT"
repository = "https://github.com/cauliyang/rboss"

[profile.dev.package."*"]
opt-level = 3

[profile.no-opt]
opt-level = 0
inherits = "dev"

[profile.profiling]
debug = 2
inherits = "release"
strip = false

[profile.release]
opt-level = 3
lto = true
codegen-units = 1
debug = 0
strip = "symbols"

[dependencies.ahash]
version = "0.8.7"

[dependencies.anyhow]
version = "1.0"

[dependencies.bio]
version = "1.5.0"

[dependencies.bstr]
version = "1.9"

[dependencies.clap]
version = "4.5.0"
features = [
    "wrap_help",
    "derive",
    "cargo",
]

[dependencies.clap-verbosity-flag]
version = "2.1.2"

[dependencies.clap_complete]
version = "4.5"

[dependencies.colored]
version = "2"

[dependencies.env_logger]
version = "0.11"

[dependencies.human-panic]
version = "1.2.3"

[dependencies.indicatif]
version = "0.17"

[dependencies.log]
version = "0.4"

[dependencies.noodles-bam]
version = "0.55"

[dependencies.noodles-bgzf]
version = "0.26"

[dependencies.noodles-core]
version = "0.14"

[dependencies.noodles-csi]
version = "0.30"

[dependencies.noodles-fasta]
version = "0.32"

[dependencies.noodles-fastq]
version = "0.10"

[dependencies.noodles-sam]
version = "0.52"

[dependencies.petgraph]
version = "0.6"
features = ["serde-1"]

[dependencies.plotters]
version = "0.3"

[dependencies.polars]
version = "0.37"
features = ["lazy"]

[dependencies.rayon]
version = "1.8"

[dependencies.regex]
version = "1.10"

[dependencies.serde]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.walkdir]
version = "2.4"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.assert_fs]
version = "1.1"

[dev-dependencies.pretty_assertions]
version = "1"

[dev-dependencies.sha256]
version = "1.5"

[dev-dependencies.tempfile]
version = "3.10"

[features]
graph = []