use assert_cmd::cmd::Command;
use pretty_assertions::assert_eq;
use std::fs;

#[test]
fn test_fq2fa() {
    let ground_truth = fs::read("tests/data/test_case1.fa").unwrap();
    let ground_truth_sha256 = sha256::digest(ground_truth.as_slice());

    let mut cmd = Command::cargo_bin("rboss").unwrap();
    cmd.args(["fq2fa", "tests/data/test_case1.fq"]);
    cmd.assert().success();

    let output = cmd.output().expect("failed to execute process");
    let output_sha256 = sha256::digest(output.stdout.as_slice());

    assert_eq!(ground_truth_sha256, output_sha256);
}