#pragma once

#include "rust/cxx.h"
#include <GraphMol/GraphMol.h>
#include <GraphMol/MolStandardize/Tautomer.h>
#include <GraphMol/MolStandardize/Charge.h>

namespace RDKit {
    using TautomerEnumerator = RDKit::MolStandardize::TautomerEnumerator;
    using TautomerEnumeratorResult = RDKit::MolStandardize::TautomerEnumeratorResult;
    using CleanupParameters = MolStandardize::CleanupParameters;
    using Uncharger = MolStandardize::Uncharger;

    std::shared_ptr<TautomerEnumerator> tautomer_enumerator();
    std::shared_ptr<TautomerEnumeratorResult> tautomer_enumerate(std::shared_ptr<TautomerEnumerator> enumerator, std::shared_ptr<ROMol> mol);
    std::shared_ptr<ROMol> tautomer_enumerator_canonicalize(std::shared_ptr<TautomerEnumerator> enumerator, std::shared_ptr<ROMol> mol);

    // I couldn't figure out a better way to return a vec of rolmols, check the backlog.md for more info
    int tautomer_enumerator_result_tautomers_size(std::shared_ptr<TautomerEnumeratorResult> enumerator_result);
    std::shared_ptr<ROMol> tautomer_enumerator_result_tautomers_at(std::shared_ptr<TautomerEnumeratorResult> enumerator_result, size_t at);

    // rdkit-Release_2022_03_1/Code/MinimalLib/common.h
    std::shared_ptr<CleanupParameters> default_cleanup_parameters();

    std::shared_ptr<Uncharger> new_uncharger(bool canonical);
    std::shared_ptr<ROMol> uncharger_uncharge(std::shared_ptr<Uncharger> uncharger, std::shared_ptr<ROMol> mol);
    std::shared_ptr<RWMol> fragment_parent(std::shared_ptr<RWMol> rw_mol, std::shared_ptr<CleanupParameters> cleanup_params, bool skip_standardize);
    std::shared_ptr<RWMol> normalize(std::shared_ptr<RWMol> mol, std::shared_ptr<CleanupParameters> cleanup_params);
}