# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "righor"
version = "0.2.6"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Righor creates model of Ig/TCR sequences from sequencing data."
readme = "README.md"
license = "MIT"
repository = "https://github.com/Thopic/righor"

[profile.release]
opt-level = 3
debug = 2

[lib]
name = "righor"
path = "src/lib.rs"

[[bin]]
name = "righor"
path = "src/main.rs"

[[test]]
name = "amino_acids"
path = "tests/amino_acids.rs"

[[test]]
name = "evaluate_test_vdj"
path = "tests/evaluate_test_vdj.rs"

[[test]]
name = "generation_test"
path = "tests/generation_test.rs"

[[test]]
name = "inference_test_vdj"
path = "tests/inference_test_vdj.rs"

[dependencies.anyhow]
version = "1.0.76"

[dependencies.approx_eq]
version = "0.1.8"

[dependencies.bio]
version = "1.5"

[dependencies.cfg-if]
version = "1.0"

[dependencies.csv]
version = "1.1"

[dependencies.duplicate]
version = "1.0.0"

[dependencies.dyn-clone]
version = "1.0.17"

[dependencies.enum_dispatch]
version = "0.3"

[dependencies.fast-math]
version = "0.1"

[dependencies.getrandom]
version = "0.2"
features = ["js"]

[dependencies.itertools]
version = "0.10.0"

[dependencies.kdam]
version = "0.5.1"
optional = true

[dependencies.log]
version = "0.4"
optional = true

[dependencies.memoize]
version = "0.4.2"

[dependencies.nalgebra]
version = "0.32.6"

[dependencies.ndarray]
version = "0.15"
features = [
    "approx",
    "serde",
]

[dependencies.nohash-hasher]
version = "0.2"

[dependencies.numpy]
version = "0.21"
optional = true

[dependencies.phf]
version = "0.10"
features = ["macros"]

[dependencies.pyo3]
version = "0.21"
features = [
    "extension-module",
    "anyhow",
    "multiple-pymethods",
]
optional = true

[dependencies.rand]
version = "0.8.5"
features = ["small_rng"]

[dependencies.rand_distr]
version = "0.4.0"

[dependencies.rayon]
version = "1.8.1"

[dependencies.regex]
version = "1.9"

[dependencies.serde]
version = "1.0.197"
features = [
    "derive",
    "rc",
]

[dependencies.serde_json]
version = "1.0.114"

[dependencies.wasm-bindgen]
version = "0.2.88"

[features]
default = ["kdam"]
py_binds = [
    "numpy",
    "pyo3",
    "log",
]