# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "roers"
version = "0.3.0"
authors = [
    "Dongze He <dhe17@umd.edu>",
    "Rob Patro <rob@cs.umd.edu>",
]
include = [
    "/src/lib/lib.rs",
    "/src/main.rs",
    "/Cargo.toml",
    "/Cargo.lock",
    "/README.md",
    "/LICENSE",
]
description = "A tool to prepare augmented annotations for single-cell RNA-seq analysis."
homepage = "https://github.com/COMBINE-lab/roers"
readme = "README.md"
keywords = [
    "genomics",
    "GTF-GFF",
    "splici",
    "scRNA-seq",
    "augmented-reference",
]
categories = [
    "science",
    "data-structures",
]
license-file = "LICENSE"
repository = "https://github.com/COMBINE-lab/roers"

[lib]
name = "roers"
path = "src/lib/lib.rs"

[[bin]]
name = "roers"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.75"

[dependencies.clap]
version = "4.4.7"
features = [
    "derive",
    "wrap_help",
    "cargo",
]

[dependencies.grangers]
version = "0.4.0"

[dependencies.itertools]
version = "0.11.0"

[dependencies.noodles]
version = "0.56.0"
features = [
    "gtf",
    "gff",
    "fasta",
    "core",
]

[dependencies.oomfi]
version = "0.1.2"

[dependencies.peak_alloc]
version = "0.2.0"

[dependencies.polars]
version = "0.34.2"
features = [
    "lazy",
    "dataframe_arithmetic",
    "sort_multiple",
    "checked_arithmetic",
    "rows",
    "dtype-struct",
    "dtype-categorical",
    "list_eval",
    "concat_str",
    "strings",
]

[dependencies.serde]
version = "1.0.190"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.107"

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-subscriber]
version = "0.3.17"
features = ["env-filter"]

[dependencies.xxhash-rust]
version = "0.8.7"
features = ["xxh3"]