[package]
name = "roers"
version = "0.3.0"
edition = "2021"
authors = [
  "Dongze He <dhe17@umd.edu>",
  "Rob Patro <rob@cs.umd.edu>",
]
description = "A tool to prepare augmented annotations for single-cell RNA-seq analysis."
license-file = "LICENSE"
readme = "README.md"
repository = "https://github.com/COMBINE-lab/roers"
homepage = "https://github.com/COMBINE-lab/roers"
include = [
  "/src/lib/lib.rs",
  "/src/main.rs",
  "/Cargo.toml",
  "/Cargo.lock",
  "/README.md",
  "/LICENSE",
]
keywords = [
  "genomics",
  "GTF-GFF",
  "splici",
  "scRNA-seq",
  "augmented-reference",
]
categories = ["science", "data-structures"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[[bin]]
name = "roers"
path = "src/main.rs"

[lib]
name = "roers"
path = "src/lib/lib.rs"

[dependencies]
anyhow = "1.0.75"
clap = { version = "4.4.7", features = ["derive", "wrap_help","cargo"] }
grangers = { git = "https://github.com/COMBINE-lab/grangers.git", branch="dev", version = "0.4.0" }
polars = { version = "0.34.2", features = ["lazy","dataframe_arithmetic","sort_multiple", "checked_arithmetic","rows","dtype-struct", "dtype-categorical", "list_eval","concat_str", "strings"]}
peak_alloc = "0.2.0"
tracing = "0.1.40"
tracing-subscriber = { version = "0.3.17", features = ["env-filter"] }
noodles = { version = "0.56.0", features = ["gtf","gff","fasta", "core"] }
serde = {version = "1.0.190", features = ["derive"]}
serde_json = "1.0.107"
itertools = "0.11.0"
oomfi = "0.1.2"
xxhash-rust = { version = "0.8.7", features = ["xxh3"] }