[package]
name = "rsrs"
version = "0.1.0"
edition = "2021"
authors = [ 
  "Rob Patro <rob@cs.umd.edu>"
]
description = "command line tool to compute seqcol objects and digests"
license-file = "LICENSE"
readme = "README.md"
repository = "https://github.com/COMBINE-lab/rsrs"
homepage = "https://github.com/COMBINE-lab/rsrs"
documentation = "https://docs.rs/rsrs"
include = ["src/*.rs", "/Cargo.toml", "/README.md", "/LICENSE"]
keywords = [
  "genomics",
  "provenance",
  "seqcol",
]
categories = [ "science", "command-line-utilities"]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
anyhow = "1.0.81"
clap = { version = "4.5.4", features = ["derive", "wrap_help", "cargo"] }
noodles = { version = "0.67.0", features = ["sam", "bam", "cram"] }
noodles-util = { version = "0.39.0", features = ["alignment"] }
seqcol_rs = { git = "https://github.com/COMBINE-lab/seqcol_rs", branch = "dev", version = "0.1.1" }
serde_json = { version = "1.0.115", features = ["indexmap", "preserve_order"] }

# The profile that 'cargo dist' will build with
[profile.dist]
inherits = "release"
lto = "thin"

# Config for 'cargo dist'
[workspace.metadata.dist]
# The preferred cargo-dist version to use in CI (Cargo.toml SemVer syntax)
cargo-dist-version = "0.12.0"
# CI backends to support
ci = ["github"]
# The installers to generate for each app
installers = ["shell"]
# Target platforms to build apps for (Rust target-triple syntax)
targets = ["aarch64-apple-darwin", "x86_64-apple-darwin", "x86_64-unknown-linux-gnu"]
# Publish jobs to run in CI
pr-run-mode = "plan"
# Whether to install an updater program
install-updater = false

[workspace.metadata.dist.github-custom-runners]
aarch64-apple-darwin = "macos-14"