# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "rust-bio-tools"
version = "0.42.2"
authors = [
    "Johannes Köster <johannes.koester@tu-dortmund.de>",
    "Erik Clarke <ecl@pennmedicine.upenn.edu>",
]
description = "A set of fast and robust command line utilities for bioinformatics tasks based on Rust-Bio."
homepage = "https://github.com/rust-bio/rust-bio-tools"
readme = "README.md"
license-file = "LICENSE.md"

[profile.develop]
lto = false
codegen-units = 128
inherits = "release"

[profile.release]
lto = "fat"
codegen-units = 1

[[bin]]
name = "rbt"
path = "src/main.rs"

[dependencies.GSL]
version = "7.0.0"

[dependencies.anyhow]
version = "1"

[dependencies.approx]
version = "0.4"

[dependencies.bio]
version = "0.39"

[dependencies.bio-types]
version = ">=0.5.1"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "2.31"
features = [
    "yaml",
    "color",
    "suggestions",
]

[dependencies.csv]
version = "1.0.2"

[dependencies.custom_derive]
version = "0.1"

[dependencies.derive-new]
version = "0.5"

[dependencies.fern]
version = "0.5.7"

[dependencies.flate2]
version = "1.0.5"

[dependencies.indicatif]
version = "0.11"

[dependencies.itertools]
version = "0.9"

[dependencies.jsonm]
version = "0.1.4"

[dependencies.lazy_static]
version = "1.4"

[dependencies.log]
version = "0.4.6"

[dependencies.lz-str]
version = "0.1.0"

[dependencies.newtype_derive]
version = "0.1"

[dependencies.ordered-float]
version = "0.5"

[dependencies.rand]
version = "0.7.3"

[dependencies.rand_core]
version = "0.5.1"

[dependencies.rayon]
version = "1.5"

[dependencies.regex]
version = "1.3"

[dependencies.reqwest]
version = "0.9"

[dependencies.rocksdb]
version = "0.19"

[dependencies.rust-htslib]
version = "0.46.0"

[dependencies.rustc-serialize]
version = "0.3"

[dependencies.serde]
version = "1.0"

[dependencies.serde_derive]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.streaming-stats]
version = "0.2.2"

[dependencies.structopt]
version = "0.3"

[dependencies.tempfile]
version = "3.0"

[dependencies.tera]
version = "1"

[dependencies.thiserror]
version = "1"

[dependencies.uuid]
version = "0.7"
features = ["v4"]

[dependencies.xlsxwriter]
version = "0.6"
features = [
    "use-openssl-md5",
    "no-md5",
]

[features]
default = ["GSL/v2_1"]