sample,contig length,Viruses,Eukaryota,Bacteria,Archaea,thereof SARS,Unclassified,pangolin strain,variants of interest,other variants
1,29895,86.35,8.37,0.08,0.0,86.33,4.38,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.999 ORF1ab:T1001I 0.999 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 0.998 ORF1ab:S3675_F3677del 0.998 ORF1ab:P4804L 0.972 ORF1ab:I4944T 0.989 ORF1ab:T5005I 0.998 ORF1ab:L5304P 1.0 S:H69_V70del 0.999 S:Y145del 1.0 S:A570D 0.999 S:D614G 0.999 S:P681H 0.999 S:T716I 0.999 S:S982A 0.999 S:D1118H 1.0 ORF3a:W131C 1.0 ORF8:Q27Ter 0.99 ORF8:R52I 1.0 ORF8:K68Ter 0.999 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 1.0
2,30053,9.61,56.95,0.13,0.01,9.59,25.66,B.1.1.7 17/17,S:N501Y 0.952 ENSSASP00005000004.1 S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.998 ORF1ab:T1001I 0.998 ORF1ab:E1244K 0.988 ORF1ab:E1244K 0.988 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 0.995 ORF1ab:I2230T 0.995 ORF1ab:S2261F 1.0 ORF1ab:S2261F 1.0 ORF1ab:P3504L 0.598 ORF1ab:P3504L 0.598 ORF1ab:P3504L 1.0 ORF1ab:P3504L 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:L4715Ter 0.548 ORF1ab:P4804L 1.0 ORF1ab:T5005I 0.52 ORF1ab:T5005I 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 1.0 S:H69_V70del 1.0 S:Y145del 0.993 S:A570D 1.0 S:D614G 1.0 S:P681H 1.0 S:T716I 0.998 S:S982A 0.998 S:D1118H 1.0 ORF8:Q27Ter 0.757 ORF8:Q27Ter 0.988 ORF8:R52I 1.0 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 1.0
3,29915,11.6,1.27,78.46,0.0,11.6,8.52,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.989 ORF1ab:T1001I 0.989 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2229_I2230delinsNT 0.785 ORF1ab:I2229_I2230delinsNT 0.785 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.865 ORF1ab:T5005I 1.0 ORF1ab:L5304P 0.99 ORF1ab:S5784G 0.998 ORF1ab:N6272D 1.0 ORF1ab:T6530I 1.0 S:H69_V70del 0.995 S:Y145del 0.998 S:A222V 0.999 S:A570D 0.989 S:D614G 0.998 S:P681H 0.998 S:T716I 1.0 S:S982A 0.99 S:D1118H 1.0 ORF7a:Q62_F63delinsH 0.998 ORF8:Q27Ter 0.638 ORF8:Q27Ter 0.997 ORF8:R52I 1.0 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 1.0
4,30030,3.91,89.82,0.26,0.0,3.79,5.23,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 1.0 ORF1ab:T1001I 1.0 ORF1ab:A1708_N1709delinsDS 0.72 ORF1ab:A1708_N1709delinsDS 0.72 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_K3678delinsQ 1.0 ORF1ab:S3675_K3678delinsQ 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.942 ORF1ab:T5005I 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 1.0 ORF1ab:Ter6271_N6272delinsTer 0.707 ORF1ab:Ter6271_N6272delinsTer 1.0 ORF1ab:T6530I 1.0 S:L5F 0.99 S:L5FfsTer9 0.927 S:H69_V70del 0.976 S:Y145del 1.0 S:A222V 0.99 S:E298NfsTer19 0.505 S:A570D 0.995 S:D614G 1.0 S:P681H 0.996 S:T716I 1.0 S:S982A 0.998 S:D1118H 1.0 M:V143A 0.567 ORF7a:Q62_F63delinsH 0.997 ORF8:Q27Ter 1.0 ORF8:R52I 1.0 ORF8:Y73C 1.0 ORF8:I121L 0.799 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.989
5,29817,1.14,89.06,6.3,0.0,1.13,3.27,B.1.1.7 17/17,S:T500_N501delinsSY 1.0 ENSSASP00005000004.1 S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:A964V 1.0 ORF1ab:A964V 1.0 ORF1ab:T1001I 1.0 ORF1ab:T1001I 1.0 ORF1ab:A1708D 0.978 ORF1ab:A1708D 0.978 ORF1ab:T1908S 1.0 ORF1ab:T1908S 1.0 ORF1ab:I2229_I2230delinsNT 0.55 ORF1ab:I2229_I2230delinsNT 0.55 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S4382G 1.0 ORF1ab:S4382G 1.0 ORF1ab:H4714R 0.853 ORF1ab:P4804T 0.592 ORF1ab:P4804L 0.64 ORF1ab:T5005I 0.788 ORF1ab:L5304P 1.0 ORF1ab:S5784V 1.0 ORF1ab:S5784G 1.0 ORF1ab:A6432V 1.0 S:H69_V70del 1.0 S:L141_Y144delinsSDV 0.991 S:Y145del 1.0 S:A570D 1.0 S:D614G 1.0 S:P681H 1.0 S:T716I 1.0 S:S982A 0.993 S:D1118H 1.0 E:T9I 0.822 ORF8:T26_Q27delinsSTer 0.695 ORF8:Q27Ter 0.58 ORF8:Q27Ter 1.0 ORF8:R52I 1.0 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:M234_S235delinsKF 0.857 N:S235F 1.0
6,30027,94.08,4.04,0.64,,94.0,1.12,B.1.1.7 17/17,S:N501Y 0.99 ENSSASP00005000004.1,ORF1ab:T1001I 0.99 ORF1ab:T1001I 0.99 ORF1ab:A1708D 0.999 ORF1ab:A1708D 0.999 ORF1ab:I2230T 0.999 ORF1ab:I2230T 0.999 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.945 ORF1ab:I4944T 0.99 ORF1ab:T5005I 0.99 ORF1ab:L5304P 0.999 S:H69_V70del 1.0 S:Y145del 0.999 S:A570D 0.99 S:D614G 1.0 S:P681H 0.999 S:T716I 0.999 S:S982A 0.999 S:D1118H 1.0 ORF3a:W131C 0.999 ORF8:Q27Ter 0.981 ORF8:R52I 0.999 ORF8:I58del 0.991 ORF8:K68Ter 1.0 ORF8:Y73C 0.999 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.999
7,17872,0.23,95.99,1.34,0.0,0.21,2.12,B.1.1.91,,ORF1ab:T350I 0.944 ORF1ab:T350I 0.944 ORF1ab:A486V 1.0 ORF1ab:A486V 1.0 ORF1ab:T490A 1.0 ORF1ab:T490A 1.0 ORF1ab:I569M 1.0 ORF1ab:I569M 1.0 ORF1ab:D571G 1.0 ORF1ab:D571G 1.0 ORF1ab:E972K 0.916 ORF1ab:E972K 0.916 ORF1ab:R1464W 0.55 ORF1ab:R1464W 0.55 ORF1ab:N1555D 0.55 ORF1ab:N1555D 0.55 ORF1ab:D2037E 1.0 ORF1ab:D2037E 1.0 ORF1ab:F2358LfsTer10 1.0 ORF1ab:F2358LfsTer10 1.0 ORF1ab:F3031L 0.55 ORF1ab:F3031L 0.55 ORF1ab:G3334S 0.938 ORF1ab:G3334S 0.938 ORF1ab:L3505Q 0.663 ORF1ab:L3505Q 0.663 ORF1ab:E4622A 0.905 ORF1ab:R4684K 0.55 ORF1ab:L4801P 0.55 ORF1ab:T5005N 0.55 ORF1ab:T5152M 1.0 ORF1ab:M5216I 1.0 ORF1ab:M5357T 0.55 ORF1ab:P6059Q 0.775 ORF1ab:Q6485Ter 0.799 S:S514P 0.775 S:D614C 1.0 S:D614G 1.0 M:Y204C 0.55 N:S2F 0.933 N:R203_G204delinsKR 1.0
8,29232,1.26,95.36,0.05,0.0,1.24,3.13,B.1.1.7 17/17,S:T500_N501delinsSY 1.0 ENSSASP00005000004.1 S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.972 ORF1ab:T1001I 0.972 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:L4715F 0.821 ORF1ab:P4804L 1.0 ORF1ab:T5005I 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 0.952 S:H69_V70del 1.0 S:Y144_Y145delinsH 1.0 S:Y145del 1.0 S:L296HfsTer21 0.548 S:L296PfsTer21 0.561 S:A570D 0.987 S:D614G 1.0 S:P681H 0.987 S:T716I 0.973 S:S982A 0.994 S:D1118H 1.0 ORF8:Q27Ter 1.0 ORF8:A51_R52delinsVI 0.811 ORF8:R52I 1.0 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.848 N:S235F 0.979
9,30027,5.8,12.02,68.02,0.0,5.78,14.0,B.1.1.70,,ORF1ab:T350I 0.987 ORF1ab:T350I 0.987 ORF1ab:A486V 1.0 ORF1ab:A486V 1.0 ORF1ab:E972K 0.998 ORF1ab:E972K 0.998 ORF1ab:D2037E 0.984 ORF1ab:D2037E 0.984 ORF1ab:G3334S 1.0 ORF1ab:G3334S 1.0 ORF1ab:E4622A 0.998 ORF1ab:T5152M 1.0 ORF1ab:Ter5236WextTer? 1.0 ORF1ab:P6059Q 1.0 ORF1ab:Q6485Ter 0.997 S:E298NfsTer19 0.514 S:D614G 1.0 N:S2F 1.0 N:R203_G204delinsKR 0.997
10,30000,1.29,62.54,28.69,0.0,1.27,7.31,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 1.0 ORF1ab:T1001I 1.0 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.872 ORF1ab:T5005I 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 0.971 ORF1ab:S6958G 1.0 S:H69_V70del 1.0 S:Y145del 0.986 S:A570D 1.0 S:D614G 1.0 S:P681H 0.971 S:T716I 1.0 S:S982A 1.0 S:D1118H 1.0 ORF8:Q27Ter 0.99 ORF8:R52I 1.0 ORF8:Y73C 1.0 N:D3_N4delinsLS 1.0 N:D3L 1.0 N:D3L 1.0 N:D3_N4delinsLD 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.997
11,7129,0.3,94.71,2.36,0.0,0.11,1.85,None seq_len:7129,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 1.0 ORF1ab:T1001I 1.0 ORF1ab:E1015D 0.55 ORF1ab:E1015D 0.55 ORF1ab:K1053NfsTer23 1.0 ORF1ab:K1053NfsTer23 1.0 ORF1ab:Q1332L 1.0 ORF1ab:Q1332L 1.0 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:A2470V 1.0 ORF1ab:A2470V 1.0 ORF1ab:V2795G 0.55 ORF1ab:V2795G 0.55 ORF1ab:F3628D 0.55 ORF1ab:F3628D 0.55 ORF1ab:Q4703K 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 1.0 ORF1ab:K6080R 0.55 ORF1ab:Ter6086QextTer? 0.55 ORF1ab:L6503S 0.55 ORF1ab:T6530I 1.0 ORF1ab:W6661R 0.55 ORF1ab:L6865_Y6866delinsSN 1.0 S:A222V 1.0 S:Y423H 0.775 S:A570D 0.775 S:P681H 1.0 S:T716I 1.0 S:S982A 1.0 S:D1118H 1.0 ORF7a:Q62_F63delinsH 1.0 ORF8:Q27Ter 1.0 ORF8:Q27Ter 1.0 ORF8:R52I 1.0 ORF8:Y73C 1.0 ORF8:I121L 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:M234_S235delinsKF 1.0 N:S235F 1.0
12,30315,0.72,91.35,5.2,0.0,0.68,2.4,B.1.1.70,S:N501Y 0.167 ENSSASP00005000004.1,ORF1ab:T350I 1.0 ORF1ab:T350I 1.0 ORF1ab:S485_A486delinsRV 0.85 ORF1ab:S485_A486delinsRV 0.85 ORF1ab:A486V 1.0 ORF1ab:A486V 1.0 ORF1ab:E972K 0.961 ORF1ab:E972K 0.961 ORF1ab:D2037E 1.0 ORF1ab:D2037E 1.0 ORF1ab:K2219Q 1.0 ORF1ab:K2219Q 1.0 ORF1ab:G3334S 1.0 ORF1ab:G3334S 1.0 ORF1ab:E4622A 0.983 ORF1ab:T5152M 1.0 ORF1ab:Ter5236WextTer? 1.0 ORF1ab:P6059Q 0.76 ORF1ab:Q6485Ter 0.62 ORF1ab:Q6485Ter 1.0 S:D614G 0.734 S:D614G 0.977 N:S2F 0.962 N:R203_G204delinsKR 1.0
13,30012,11.99,84.32,0.19,0.0,11.96,3.27,B.1.525,S:E484K 0.986 ENSSASP00005000004.1,ORF1ab:K58R 1.0 ORF1ab:K58R 1.0 ORF1ab:T2007I 1.0 ORF1ab:T2007I 1.0 ORF1ab:K2589R 0.999 ORF1ab:K2589R 0.999 ORF1ab:L3674_F3677delinsS 0.992 ORF1ab:L3674_F3677delinsS 0.992 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:A5969V 0.99 ORF1ab:Ter6703RextTer? 1.0 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 0.985 S:A67_V70delinsVI 1.0 S:Y145del 1.0 S:D614G 0.999 S:Q677H 0.99 S:F888L 0.99 ORF3a:W149C 1.0 E:L21F 1.0 E:L21FfsTer28 0.952 M:I82T 1.0 ORF6:F2del 1.0 N:S2_D3delinsY 1.0 N:A12G 1.0 N:T205I 1.0 N:A217S 0.999
14,29914,29.81,67.49,0.07,0.0,29.78,2.39,B.1.525,S:E484K 1.0 ENSSASP00005000004.1,ORF1ab:T2007I 1.0 ORF1ab:T2007I 1.0 ORF1ab:K2589R 0.999 ORF1ab:K2589R 0.999 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:A5969V 0.99 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 1.0 S:A67_V70delinsVI 0.998 S:Y145del 0.999 S:D614G 0.999 S:Q677H 0.99 S:F888L 0.999 ORF3a:W149C 0.998 E:L21F 0.999 E:L21FfsTer28 0.873 M:I82T 0.998 ORF6:F2del 1.0 N:S2_D3delinsY 0.999 N:A12G 1.0 N:T205I 0.999 N:A217S 0.999
15,30003,25.21,68.01,0.48,,25.01,5.48,B.1.525,S:E484K 1.0 ENSSASP00005000004.1,ORF1ab:T2007I 1.0 ORF1ab:T2007I 1.0 ORF1ab:K2589R 0.999 ORF1ab:K2589R 0.999 ORF1ab:S3675_K3678delinsR 0.995 ORF1ab:S3675_K3678delinsR 0.995 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:L4391I 0.998 ORF1ab:L4391I 0.998 ORF1ab:A5969V 0.99 ORF1ab:S6415R 0.532 ORF1ab:Ter6820WextTer? 0.998 S:Q52R 0.97 S:A67_V70delinsVI 1.0 S:Y145del 0.999 S:D614G 0.999 S:Q677H 0.99 S:F888L 0.999 ORF3a:W149C 1.0 E:L21F 0.999 E:L21FfsTer28 0.927 M:I82T 1.0 ORF6:F2del 1.0 N:S2_D3delinsY 1.0 N:A12G 0.998 N:T205I 0.999 N:A217S 0.999
16,30032,20.84,75.1,0.41,0.0,20.81,3.45,B.1.525,S:E484K 0.997 ENSSASP00005000004.1,ORF1ab:T2007I 1.0 ORF1ab:T2007I 1.0 ORF1ab:K2589R 0.99 ORF1ab:K2589R 0.99 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:V4216I 0.997 ORF1ab:V4216I 0.997 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:A5969V 0.99 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 1.0 S:A67_V70delinsVI 1.0 S:Y145del 0.999 S:D614G 1.0 S:Q677H 0.981 S:F888L 0.99 ORF3a:W149C 0.999 E:L21F 1.0 E:L21FfsTer28 0.917 M:I82T 0.998 ORF6:F2del 1.0 N:S2_D3delinsY 1.0 N:A12G 0.999 N:T205I 0.999 N:A217S 0.99
17,29973,1.73,48.2,46.15,0.0,1.72,3.1,B.1,S:E484K 1.0 ENSSASP00005000004.1 S:E484K 1.0 ENSSASP00005000004.1,ORF1ab:T2007I 1.0 ORF1ab:T2007I 1.0 ORF1ab:K2589R 0.995 ORF1ab:K2589R 0.995 ORF1ab:L3101F 0.74 ORF1ab:L3101F 0.74 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:V4216I 1.0 ORF1ab:V4216I 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4715S 1.0 ORF1ab:A5969V 1.0 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 1.0 S:A67_V70delinsVI 1.0 S:Y144_Y145delinsTer 0.895 S:Y145del 0.976 S:F543Y 0.667 S:D614G 1.0 S:Q677H 0.981 S:F888L 1.0 S:F1062S 0.688 ORF3a:W149C 0.961 E:L21F 0.956 M:I82T 1.0 ORF6:F2del 0.986 N:S2_D3delinsY 1.0 N:A12G 1.0 N:T205I 1.0 N:A217S 0.982
18,29772,11.92,83.04,0.27,0.0,11.89,4.56,B.1.525,S:E484K 0.892 ENSSASP00005000004.1 S:E484K 1.0 ENSSASP00005000004.1,ORF1ab:T2007I 0.984 ORF1ab:T2007I 0.984 ORF1ab:K2589R 0.99 ORF1ab:K2589R 0.99 ORF1ab:S3675_F3677del 0.989 ORF1ab:S3675_F3677del 0.989 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:D3681TfsTer9 0.625 ORF1ab:D3681TfsTer9 0.625 ORF1ab:V4216I 1.0 ORF1ab:V4216I 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:A5969V 0.988 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 0.542 S:Q52R 0.945 S:A67_S71delinsVIP 0.952 S:A67_V70delinsVI 0.983 S:Y145del 0.997 S:D614G 0.998 S:Q677H 0.98 S:F888L 0.998 ORF3a:W149C 1.0 E:L21F 1.0 E:L21FfsTer28 0.987 M:I82T 0.984 ORF6:F2del 0.998 N:S2_D3delinsY 1.0 N:A12G 0.996 N:T205I 0.989 N:A217S 0.989
19,30019,7.38,86.06,0.67,0.0,7.33,5.62,B.1,S:E484K 0.991 ENSSASP00005000004.1,ORF1ab:F924S 0.629 ORF1ab:F924S 0.629 ORF1ab:T2007I 0.994 ORF1ab:T2007I 0.994 ORF1ab:K2589R 0.99 ORF1ab:K2589R 0.99 ORF1ab:S3675_K3678delinsR 0.975 ORF1ab:S3675_K3678delinsR 0.975 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:V4216I 1.0 ORF1ab:V4216I 1.0 ORF1ab:L4391I 1.0 ORF1ab:L4391I 1.0 ORF1ab:H4714Y 0.977 ORF1ab:A5969V 1.0 ORF1ab:Ter6820WextTer? 1.0 S:Q52R 1.0 S:A67_V70delinsVI 1.0 S:A67_V70delinsVI 1.0 S:Y145del 0.995 S:L296PfsTer21 0.586 S:S297LfsTer21 0.557 S:D614G 0.999 S:Q677H 0.971 S:F888L 0.989 ORF3a:W149C 1.0 E:L21F 1.0 E:L21FfsTer28 0.96 M:I82T 1.0 ORF6:F2del 1.0 N:S2_D3delinsY 0.997 N:A12G 0.996 N:T205I 0.989 N:A217S 0.998
20,30088,11.38,4.6,69.55,0.0,11.36,14.21,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:S216P 0.628 ORF1ab:S216P 0.628 ORF1ab:T1001I 0.989 ORF1ab:T1001I 0.989 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230_I2231delinsTV 0.537 ORF1ab:I2230_I2231delinsTV 0.537 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.919 ORF1ab:T5005I 1.0 ORF1ab:L5304P 0.53 ORF1ab:L5304P 1.0 ORF1ab:S5784G 0.998 ORF1ab:N6272D 1.0 ORF1ab:Q6449Ter 1.0 ORF1ab:T6530I 0.999 S:H69_V70del 1.0 S:Y145del 1.0 S:A222V 0.999 S:A570D 0.989 S:D614G 0.908 S:D614G 1.0 S:P681H 0.998 S:T716I 1.0 S:A893V 1.0 S:S982A 0.999 S:D1118H 0.997 ORF7a:Q62_F63delinsH 0.998 ORF8:Q27Ter 0.979 ORF8:R52I 1.0 ORF8:Y73C 1.0 ORF8:I121L 0.627 N:D3L 1.0 N:R203_G204delinsKR 0.998 N:S235F 0.89 N:S235F 0.999
21,29985,74.53,22.01,0.57,,74.33,2.77,B.1.1.7 17/17,S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.99 ORF1ab:T1001I 0.99 ORF1ab:A1708D 0.999 ORF1ab:A1708D 0.999 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.945 ORF1ab:T5005I 0.99 ORF1ab:L5304P 0.999 ORF1ab:S5784G 1.0 ORF1ab:N6272D 1.0 ORF1ab:T6530I 1.0 S:H69_V70del 0.999 S:Y145del 0.999 S:A222V 0.999 S:A570D 0.99 S:D614G 0.99 S:P681H 0.999 S:T716I 0.99 S:S982A 0.999 S:D1118H 0.999 ORF7a:Q62_F63delinsH 1.0 ORF8:Q27Ter 0.99 ORF8:R52I 0.99 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.999
22,28500,0.48,7.0,74.08,0.0,0.46,18.2,B.1.1.7 15/17,S:T500_N501delinsSY 1.0 ENSSASP00005000004.1 S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 1.0 ORF1ab:T1001I 1.0 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:Y1906C 1.0 ORF1ab:Y1906C 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:H4714R 1.0 ORF1ab:P4804L 1.0 ORF1ab:T5005I 0.775 ORF1ab:L5304P 0.788 ORF1ab:Y5517TfsTer? 0.775 ORF1ab:S5784G 1.0 ORF1ab:Q6449Ter 1.0 ORF1ab:T6530I 1.0 S:H69_V70del 1.0 S:Y145del 1.0 S:Y145del 1.0 S:A222V 0.969 S:A570D 1.0 S:Q613_D614delinsRG 0.533 S:D614G 1.0 S:P681H 1.0 S:T716I 0.953 S:A893V 0.947 S:S982A 0.98 S:D1118H 0.933 ORF7a:Q62_F63delinsH 1.0 ORF8:Q27Ter 0.908 ORF8:R52I 1.0 ORF8:Q72_Y73delinsLC 0.604 ORF8:Y73C 0.938 N:D3L 0.958 N:I157V 1.0 N:R203_G204delinsKR 1.0 N:M234_S235delinsKF 0.534 N:S235F 0.536 N:S235F 0.981
23,32229,8.21,9.24,78.28,,8.19,4.06,B.1.1.7 17/17,S:E484A 0.342 ENSSASP00005000004.1 S:N501Y 1.0 ENSSASP00005000004.1,ORF1ab:T1001I 0.998 ORF1ab:T1001I 0.998 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.92 ORF1ab:T5005I 1.0 ORF1ab:L5304P 1.0 ORF1ab:S5784G 0.998 ORF1ab:N6272D 1.0 ORF1ab:T6530I 0.999 S:H69_V70del 1.0 S:Y145del 0.998 S:A222V 0.999 S:S494P 0.691 S:A570D 1.0 S:D614G 0.99 S:P681H 0.999 S:T716I 0.999 S:S982A 0.999 S:D1118H 0.988 ORF7a:Q62_F63delinsH 0.999 ORF8:Q27Ter 0.752 ORF8:Q27Ter 1.0 ORF8:R52I 0.988 ORF8:Y73C 0.998 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 1.0
24,1,0.02,6.79,81.85,0.0,0.01,11.2,None seq_len:1,,S:H69_V70del 1.0
25,30456,89.8,6.05,0.03,0.0,89.78,3.81,B.1.1.7 17/17,S:N501Y 0.999 ENSSASP00005000004.1,ORF1ab:T1001I 0.99 ORF1ab:T1001I 0.99 ORF1ab:A1708D 1.0 ORF1ab:A1708D 1.0 ORF1ab:I2230T 1.0 ORF1ab:I2230T 1.0 ORF1ab:S2261F 1.0 ORF1ab:S2261F 1.0 ORF1ab:P3504L 0.981 ORF1ab:P3504L 0.981 ORF1ab:S3675_F3677del 1.0 ORF1ab:S3675_F3677del 1.0 ORF1ab:P4804L 0.954 ORF1ab:T5005I 0.998 ORF1ab:L5304P 1.0 ORF1ab:S5784G 0.999 S:H69_V70del 0.999 S:Y145del 0.999 S:A570D 0.999 S:D614G 0.999 S:P681H 0.999 S:T716I 0.999 S:S982A 0.999 S:D1118H 1.0 ORF8:Q27Ter 0.99 ORF8:R52I 0.999 ORF8:Y73C 1.0 N:D3L 1.0 N:R203_G204delinsKR 1.0 N:S235F 0.999