# Change Log All notable changes to this project will be documented in this file. This project adheres to [Semantic Versioning](http://semver.org/). ## [0.48.0](https://github.com/rust-bio/rust-htslib/compare/v0.47.1...v0.48.0) (2024-11-12) ### Features * Add to_vcf_string method for bcf::Record ([#443](https://github.com/rust-bio/rust-htslib/issues/443)) ([489c0d7](https://github.com/rust-bio/rust-htslib/commit/489c0d7677445cfe38580c8d4c843ad4f4e2d827)) ### Bug Fixes * return error when bgzf_open fails to open a file ([#444](https://github.com/rust-bio/rust-htslib/issues/444)) ([9bda5f7](https://github.com/rust-bio/rust-htslib/commit/9bda5f768a5c54767c7e08ef1cafd28ff3f2a3b3)) ## [0.47.1](https://github.com/rust-bio/rust-htslib/compare/v0.47.0...v0.47.1) (2024-11-12) ### Bug Fixes * allow leading deletions in read_pos method of CigarStringView. ([#447](https://github.com/rust-bio/rust-htslib/issues/447)) ([2986713](https://github.com/rust-bio/rust-htslib/commit/298671382ffeab8f1f057cde83e8474963fbfb9a)) ## [0.47.0](https://github.com/rust-bio/rust-htslib/compare/v0.46.0...v0.47.0) (2024-05-22) ### Features * Add fasta::build function + FaidxBuildError ([#418](https://github.com/rust-bio/rust-htslib/issues/418)) ([7c575ef](https://github.com/rust-bio/rust-htslib/commit/7c575ef549908745f34d9371986551f3d70ed444)) * Add rust_htslib::bcf::index::build ([#408](https://github.com/rust-bio/rust-htslib/issues/408)) ([79d70cd](https://github.com/rust-bio/rust-htslib/commit/79d70cd6683f1a019e9052baa495dada709db432)) * derive PartialEq and Eq for bam:: and bcf::Format ([#428](https://github.com/rust-bio/rust-htslib/issues/428)) ([528e543](https://github.com/rust-bio/rust-htslib/commit/528e54367367487a28bbc2566bd37de995f8ed1d)) ### Bug Fixes * bam::Record:new should return a valid record ([#361](https://github.com/rust-bio/rust-htslib/issues/361)) ([87f2011](https://github.com/rust-bio/rust-htslib/commit/87f20116c4337eda17a416ebafb8976abc188d87)) * build for macOS ([#431](https://github.com/rust-bio/rust-htslib/issues/431)) ([d869fdd](https://github.com/rust-bio/rust-htslib/commit/d869fdda03900cafae0f4f60b033121dcd57b723)) * in bam record buffer, change the start of the window to the first added item in last iteration ([#430](https://github.com/rust-bio/rust-htslib/issues/430)) ([56ee2bd](https://github.com/rust-bio/rust-htslib/commit/56ee2bd562788dad0dc8516d0e3db90ffa916320)) * Panic on trailing omitted FORMAT records ([#417](https://github.com/rust-bio/rust-htslib/issues/417)) ([9f575ee](https://github.com/rust-bio/rust-htslib/commit/9f575ee40e15737731bc8234812c0cf36c1157f4)) ## [0.46.0](https://github.com/rust-bio/rust-htslib/compare/v0.45.0...v0.46.0) (2024-02-22) ### Features * making several RecordBuffer methods public ([6757f52](https://github.com/rust-bio/rust-htslib/commit/6757f5219955fd4edba4f61e62978ce1e001068e)) ### Bug Fixes * fix building libz-sys ([#420](https://github.com/rust-bio/rust-htslib/issues/420)) ([01c8849](https://github.com/rust-bio/rust-htslib/commit/01c884945686e7a6756406b579fde28657f70b36)) ## [0.45.0](https://github.com/rust-bio/rust-htslib/compare/v0.44.1...v0.45.0) (2024-02-07) ### Features * adding function to get sequence length to faidx mod ([#410](https://github.com/rust-bio/rust-htslib/issues/410)) ([ae79eba](https://github.com/rust-bio/rust-htslib/commit/ae79eba82ef6929105bdbe08246a8e973660899e)) ### Bug Fixes * Loosen acceptable types to support current linux build on aarch64 ([#415](https://github.com/rust-bio/rust-htslib/issues/415)) ([1d78d12](https://github.com/rust-bio/rust-htslib/commit/1d78d1251a052461605d28cd8cf832ccad93ef73)) ## [0.44.1](https://github.com/rust-bio/rust-htslib/compare/v0.44.0...v0.44.1) (2023-06-21) ### Bug Fixes * use correct return value in bcf_get_format and bcf_get_info_values ([#398](https://github.com/rust-bio/rust-htslib/issues/398)) ([f9a1981](https://github.com/rust-bio/rust-htslib/commit/f9a1981fa84eef39e35f868ddfc773ea265b94b3)) ## [0.44.0](https://github.com/rust-bio/rust-htslib/compare/v0.43.1...v0.44.0) (2023-06-20) ### Features * implement Clone for bcf::Record ([#394](https://github.com/rust-bio/rust-htslib/issues/394)) ([e89538d](https://github.com/rust-bio/rust-htslib/commit/e89538d5a9971c6508ac38d92ac468f3d70241aa)) * implement htslib basemod api ([#385](https://github.com/rust-bio/rust-htslib/issues/385)) ([8beee14](https://github.com/rust-bio/rust-htslib/commit/8beee145a116f7ae936f1b6e36d876116dca18f1)) ### Bug Fixes * include doctests in test coverage calculations ([#397](https://github.com/rust-bio/rust-htslib/issues/397)) ([8ed0837](https://github.com/rust-bio/rust-htslib/commit/8ed083783fa1dce09535564a090d37f687fc832f)) ## [0.43.1](https://github.com/rust-bio/rust-htslib/compare/v0.43.0...v0.43.1) (2023-05-16) ### Bug Fixes * implement Drop for faidx::Reader, destroying the fai handle ([#391](https://github.com/rust-bio/rust-htslib/issues/391)) ([0e6d6ac](https://github.com/rust-bio/rust-htslib/commit/0e6d6acec9a6d24ed6baf810e56f02394737a046)) ## [0.43.0](https://github.com/rust-bio/rust-htslib/compare/v0.42.0...v0.43.0) (2023-05-12) ### Features * HeaderRecord::push_tag: Value may be owned ([#388](https://github.com/rust-bio/rust-htslib/issues/388)) ([b64537d](https://github.com/rust-bio/rust-htslib/commit/b64537db011b76e5ace73a5e74c598a62a0a018b)) * Index for `bam::IndexedReader` ([#387](https://github.com/rust-bio/rust-htslib/issues/387)) ([fb74387](https://github.com/rust-bio/rust-htslib/commit/fb743875182c9232894e07007367f09f05d6e275)) ## [0.42.0](https://github.com/rust-bio/rust-htslib/compare/v0.41.1...v0.42.0) (2023-03-30) ### Features * Add ability to fetch number of sequences and I-th sequence from FAI index ([#377](https://github.com/rust-bio/rust-htslib/issues/377)) ([6ecc4bd](https://github.com/rust-bio/rust-htslib/commit/6ecc4bd1f88110da278c7f934453024e4e64ac74)) ## [0.41.1](https://github.com/rust-bio/rust-htslib/compare/v0.41.0...v0.41.1) (2023-03-03) ### Features * Revised calculation of leading- and trailing-softclips ([#375](https://github.com/rust-bio/rust-htslib/issues/375)) ([b61dd2c](https://github.com/rust-bio/rust-htslib/commit/b61dd2cfb2b74c0180f2d76bbd4ed4eb14fa09b3)) ### Performance Improvements * update htslib and corresponding bindings to 1.16 ([#366](https://github.com/rust-bio/rust-htslib/issues/366)) ([f597ce0](https://github.com/rust-bio/rust-htslib/commit/f597ce0451e3f3c393166a7291486bbc2bde4c39)) ## [0.40.2](https://github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.40.1...rust-htslib-v0.40.2) (2022-10-13) ### Performance Improvements * update htslib and corresponding bindings to 1.16 ([#366](https://github.com/rust-bio/rust-htslib/issues/366)) ([f597ce0](https://github.com/rust-bio/rust-htslib/commit/f597ce0451e3f3c393166a7291486bbc2bde4c39)) ## [0.40.1](https://github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.40.0...rust-htslib-v0.40.1) (2022-08-24) ### Bug Fixes * Header::to_hashmap skips `@CO` tags, add `comments()` method ([#363](https://github.com/rust-bio/rust-htslib/issues/363)) ([c24a7f6](https://github.com/rust-bio/rust-htslib/commit/c24a7f69fbe5d2db4a6f1fbd6eda3922fe7f1c18)) ## [0.40.0](https://github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.5...rust-htslib-v0.40.0) (2022-07-05) ### Features * Add wrapper of BGZF writer ([#349](https://github.com/rust-bio/rust-htslib/issues/349)) ([965ed88](https://github.com/rust-bio/rust-htslib/commit/965ed886a0c24ee3070e48cc192c0772ac5cbaf4)) ### Bug Fixes * update to latest release-please ([b130634](https://github.com/rust-bio/rust-htslib/commit/b130634b3d096e620dcfe59acae2200df3e4d847)) ### [0.39.5](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.4...rust-htslib-v0.39.5) (2022-05-09) ### Bug Fixes * set path in release-please config ([d8f7c6e](https://www.github.com/rust-bio/rust-htslib/commit/d8f7c6e8f31accb7576e150fa1439e177f7816cb)) ### [0.39.4](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.3...rust-htslib-v0.39.4) (2022-05-09) ### Bug Fixes * perform checkout before running release please ([cbc6a0a](https://www.github.com/rust-bio/rust-htslib/commit/cbc6a0ad37c5623d14f2ed0bcbb4c5289d012fcb)) ### [0.39.3](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.2...rust-htslib-v0.39.3) (2021-11-20) ### Bug Fixes * change the type to c_char so it can be compiled for aarch64 ([#337](https://www.github.com/rust-bio/rust-htslib/issues/337)) ([a21aff2](https://www.github.com/rust-bio/rust-htslib/commit/a21aff289bc03c7549afc7a958084ed57e8c93f2)) ### [0.39.2](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.1...rust-htslib-v0.39.2) (2021-08-23) ### Bug Fixes * Configuration when cross-compiling. Even when cross-compiling, build.rs runs on the build host. Hence within build.rs `#[cfg(target_os)]` always reflects the host, not the target. Use $CARGO_CFG_TARGET_OS instead to query target properties. ([#329](https://www.github.com/rust-bio/rust-htslib/issues/329)) ([d5198e6](https://www.github.com/rust-bio/rust-htslib/commit/d5198e6c777fdbbfdd9c73a820f1be983a458ce2)) ### [0.39.1](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.39.0...rust-htslib-v0.39.1) (2021-07-06) ### Bug Fixes * bump hts-sys version to 2.0.1 ([336c8b8](https://www.github.com/rust-bio/rust-htslib/commit/336c8b8a1779422afea1065e37bcc44f54abac42)) ## [0.39.0](https://www.github.com/rust-bio/rust-htslib/compare/rust-htslib-vrust-htslib-0.38.3...rust-htslib-v0.39.0) (2021-07-06) ### ⚠ BREAKING CHANGES * dummy major version bump to move away from previous versions that were following htslib versions. * bump to new major version (for technical reasons). * dummy breaking change to increase hts-sys major version. ### Bug Fixes * bump to new major version (for technical reasons). ([9c6db30](https://www.github.com/rust-bio/rust-htslib/commit/9c6db3060818692070db1411d63e113dc7effd64)) * dummy breaking change to increase hts-sys major version. ([93415cb](https://www.github.com/rust-bio/rust-htslib/commit/93415cbb82e4f11d257a2b2cedba2664f86a034d)) * dummy changes ([3af5ede](https://www.github.com/rust-bio/rust-htslib/commit/3af5ede13a6b44ce5d1e7f0eb90836a692e711ec)) * dummy major version bump to move away from previous versions that were following htslib versions. ([aaa70a8](https://www.github.com/rust-bio/rust-htslib/commit/aaa70a85ef9a908d3b101f23879189e84a15d23f)) * dummy release ([74d1565](https://www.github.com/rust-bio/rust-htslib/commit/74d1565329fc862f1172c0925c7b66ceb8bcf988)) * dummy release ([af2f84e](https://www.github.com/rust-bio/rust-htslib/commit/af2f84eb0411507f8866b3cc05e9a6ba9d81d172)) * dummy release ([b97915f](https://www.github.com/rust-bio/rust-htslib/commit/b97915f2c70da4c914f2e69861bf78eec5979baf)) * handle subcrate with release-please ([0a4605f](https://www.github.com/rust-bio/rust-htslib/commit/0a4605f165cb2edf4428d8fb39f7e4787585f4e1)) * trigger dummy release ([7c5a7de](https://www.github.com/rust-bio/rust-htslib/commit/7c5a7de33e2a92052126e5f44389d421974d1e02)) * update changelog ([deef08f](https://www.github.com/rust-bio/rust-htslib/commit/deef08feb0b5ba2d8abf98f2cc6d327236da8aef)) ### [0.38.3](https://www.github.com/rust-bio/rust-htslib/compare/v0.38.2...v0.38.3) (2021-07-06) ### Bug Fixes * dummy fix for triggering release ([e92e6b1](https://www.github.com/rust-bio/rust-htslib/commit/e92e6b10b0a7e5db50b12e2fbe2c42b467eb369e)) ### [0.38.2](https://www.github.com/rust-bio/rust-htslib/compare/v0.38.1...v0.38.2) (2021-07-06) ### Bug Fixes * add ID to automatic release handling ([1244393](https://www.github.com/rust-bio/rust-htslib/commit/124439300e1e3e01e1d847f7549747d560c01989)) ### [0.38.1](https://www.github.com/rust-bio/rust-htslib/compare/v0.38.0...v0.38.1) (2021-07-06) ### Bug Fixes * improved documentation ([cb0b66c](https://www.github.com/rust-bio/rust-htslib/commit/cb0b66c4a92d4f03debe38dfb2a014b154c7dd96)) ## [0.38.0](https://www.github.com/rust-bio/rust-htslib/compare/v0.37.0...v0.38.0) (2021-07-06) ### ⚠ BREAKING CHANGES * Improve bcf Record filter interface and improve docs (#306) ### Features * Improve bcf Record filter interface and improve docs ([#306](https://www.github.com/rust-bio/rust-htslib/issues/306)) ([f45e91d](https://www.github.com/rust-bio/rust-htslib/commit/f45e91dfdc64ecb662d676f2996ed4f14c079995)) ### Bug Fixes * enum name usage in doc example ([#311](https://www.github.com/rust-bio/rust-htslib/issues/311)) ([6e9ba49](https://www.github.com/rust-bio/rust-htslib/commit/6e9ba4928b60c3105490a8179d074c705ea06fd7)) ## [Unreleased] ### Changes - `bcf::Record` methods `has_filter`, `remove_filter`, `push_filter`, and `set_filter` all now take a byte slice (`&[u8]`) or an `Id`. [Unreleased]: https://github.com/rust-bio/rust-htslib/compare/v0.37.0...HEAD ## [0.37.0] - 2021-07-05 ### Added - `bcf::Record` methods `end`, `clear`, and `rlen` (@mbhall88). ### Changes - `bcf::IndexReader::fetch` parameter `end` is now an `Option`. This is inline with htslib regions, which do not require an end position (@mbhall88) - Removed unused dependencies (@sreenathkrishnan). - Improved documentation (@mbhall88). - Improved error message when failing to load index files (@johanneskoester). - Improved API for accessing AUX fields in BAM records (@jch-13). - Fixed compiler warnings (@fxwiegand). - BAM header representation is now always kept in sync between textual and binary (@jch-13). ## [0.36.0] - 2020-11-23 ### Changes - Improved genotype API in VCF/BCF records (@MaltheSR). - Read pair orientation inference for BAM records (@johanneskoester). ## [0.35.2] - 2020-11-23 ### Changes - let hts-sys dependency comply to semver. ## [0.35.1] - 2020-11-23 ### Changes - Fixed wrongly define missing value constants in bcf::record (@johanneskoester). - Bump hts-sys depedency to the latest version, containing build fixes for macOS (@johanneskoester). ## [0.35.0] - 2020-11-19 ### Changes - BREAKING: info and format field access in BCF records now allocates a separate buffer each time. In addition, it is also possible to pass a buffer that has been created manually before (@johanneskoester) - Fixes for building on macOS (@brainstorm) ### Added - ability to push genotypes into BCF record (@MaltheSR, @tedil). ## [0.34.0] - 2020-11-13 ### Added - Ability to set minimum refetch distance in `bam::RecordBuffer`. ## [0.33.0] - 2020-11-04 ### Changes - BREAKING: Rename feature 'serde' as 'serde_feature' (for technical reasons) - BREAKING: Consolidate module-wide errors into a crate-wide error module - Making `bcf::IndexedReader` always unpack records to reflect the behaviour of `bcf::Reader`. - Adding `bcf::errors::Error::FileNotFound` and using it. - Fixes for musl compilation (@brainstorm). - Improved BCF constants handling (@juliangehring) - Fixes for tabix reader (@felix-clark, @brainstorm). - Fixes for BCF handling (@holtgrewe, @tedil). - Documentation improvements (@vsoch, @brainstorm, @edmundlth). - BREAKING: Improved, more ergonomic BAM fetch API (@TiberiusPrime, @brainstorm, @tedil). - BREAKING: Let BamRecordExtensions return iterators instead of vectors (@TiberiusPrime). - Handle all errors via a unified single thiserror based enum (@landesfeind). - BREAKING: BAM read API now returns Option (@slazicoicr). ### Added - Support for reading indexed FASTA files (@landesfeind, @pmarks, @brainstorm). - Support for shared threadpools when reading and writing BAM (@pmarks, @nlhepler). - Serde support for Cigar strings (@FelixMoelder, @pmarks, @johanneskoester). - Expose bgzf functionality (@landesfeind). - Iterator over BAM records using Rc-pointers (@TiberiusPrime, @tedil). - Ability to obtain pairs of read and genome intervals from BAM (aligned_block_pairs) (@TiberiusPrime, @brainstorm). ## [0.32.0] - 2020-07-09 ### Changes - Method `seq_len()` of `bam::Record` is now public. - Speedup when parsing BAM headers (thanks to @juliangehring). - Compatibility fixes for older rust versions (thanks to @pmarks and @brainstorm). ## [0.31.0] - 2020-06-22 ### Changes - Bam record buffer now returns reference counted (Rc) objects. This makes the API more ergonomic to use. - Switched to thiserror instead of snafu for error handling. - Various cleanups and little fixes. ## [0.30.0] - 2020-04-03 ### Changes - Removed `fn header_mut()` from `bam::Read` trait. - Fixed a major performance regression when reading bam files (issue #195). ## [0.29.0] - 2020-03-26 ### Changes - Migrate buffer intervals to u64. ## [0.28.0] - 2020-03-26 ### Changes - Return u64 wherever htslib has migrated to using 64 bit. - Implement more bio-types (Interval, Locus, Strand). ## [0.27.0] - 2020-03-17 ### Changes - Updated to Htslib 1.10.2. - bam::Record.set() will panic if seq.len() != qual.len(). Previously, mismatched length would cause uninitialized memory to be written into the BAM file. - use `serde_bytes` to serialize .data section of bam::Record when using serde - large speed improvement. - change build.rs to avoid re-running when htslib or wrapper.h haven't changed. - update some dependencies. - refactor native dependency into htslib-sys crate, for greater versioning flexibility - Record::from_sam require `&mut HeaderView`. Provide the appropriate accessor. - set() no longer invalidates tag data. - Various minor improvements. ## [0.26.1] - 2019-12-03 ### Changes - Various bug fixes in CIGAR string handling, INFO tag reading and FORMAT tag reading. ## [0.26.0] - 2019-09-27 ### Changes - Allow caching of CIGAR in bam::RecordBuffer. ## [0.25.0] - 2019-09-27 ### Changes - Migrated error handling to the snafu crate: https://docs.rs/snafu. - Cleaned up and simplified API (including breaking changes). - Allow writing SAM files from the bam::Writer. ## [0.24.0] - 2019-05-31 ### Added - Allow setting unmapped BAM record (without Cigar string). - Various bug fixes and error handling improvements. - Various Pysam-derived methods for interpreting Cigar strings. ## [0.23.0] - 2019-05-02 ### Added - Support for BAM indices that are not placed beside a file.bam as file.bam.bai - Implement SequenceRead trait for BAM records. - Add function to build an index for a BAM file. - CRAM support for BAM reader and writer. ### Changes - Allow to specify particular index filename when instantiating a BAM reader. - Various bug and API fixes. ## [0.22.0] - 2018-11-02 ### Changes - Support compilation against musl. - Support for removing alleles. - Improvements to SyncedReader API. ## [0.21.0] - 2018-08-01 ### Changes - Adding `bcf::synced::SyncedReader::fetch()`, changing error type for `bcf::synced::SyncedReader::read_next()`. - Adding `bcf::Record::unpack()` for explicitely unpacking BCF records. - Fixed `bcf::synced::SyncedReader::record()`. - `bam::Record::cigar()` now returns a reference (in constant time) and needs `bam::Record::unpack_cigar()` to be called first. - Allow to create Cigar string from `bio_types::Alignment`. - Provide a cached variant of obtaining cigar string. - Lots of small usability improvements. ## [0.20.0] - 2018-06-18 ### Added - Initial implementation of synced BCF reader interface. - Several small helper methods for BAM readers. ### Changes - Not skipping `fileformat=` header any more. - BCF records are always unpacked when reading. ## [0.19.1] - 2018-06-07 ### Changed - Moved unpacking of BCF records into constructor to prevent race conditions. - Fixed bug in retrieving BCF record id. - Fixed bug in the filter iterator of BCF. ## [0.19.0] - 2018-06-01 ### Added - more push functions for BCF. ## [0.18.0] - 2018-05-04 ### Added - bcf::IndexedReader - support for writing bcf FILTER field - setting thread count in all readers and writers - setting ID and alleles in bcf records - support for tabix indexes - convert CIGAR to and from strings ## [0.17.0] - 2018-02-22 ### Added - Serde support for bam records. ### Changed - Various convenience improvements in the API. ## [0.16.0] - 2018-01-05 ### Changed - Raw Htslib bindings are now generated on the fly. - Switched to Htslib 1.6. - Fixed a potential dangling pointer to the header in bcf records. - Various small API improvements. ## [0.15.0] - 2017-12-05 ### Changed - HeaderView of bam and bcf can now be cloned. ## [0.14.0] - 2017-12-03 ### Added - An efficient ringbuffer for accessing BCF regions - An efficient ringbuffer for accessing BAM regions ### Changed - Improved mutability annotation for readers. ## [0.13.0] - 2017-09-22 ### Added - Ability to clone bam records. - Ability to set only qname. ### Changed - Further improved CIGAR string API. - Improved documentation. ## [0.12.1] - 2017-06-12 ### Changed - Adapt to changes in Rust 1.18 that caused compilation issues. ## [0.12.0] - 2017-06-01 ### Added - Support seek and tell to handle virtual offsets. ### Changed - Renamed previous seek method into fetch (in line with pysam). - Improved CIGAR API. - Updated dependencies. ## [0.11.0] - 2017-05-01 ### Added - A SAM writer. ### Changed - Improved CIGAR string API using a newtype wrapper. - Improved pileup API. - Support threaded writing for BAM files. ## [0.10.0] - 2016-11-10 ### Added - Prelude module to easily import all relevant traits. ### Changed - fine-grained constructors for STDIN/STDOUT, paths and URLs - better template handling with bam files ## [0.9.0] - 2016-11-02 ### Changed - improved genotype handling - improved error handling - improved missing value handling ## [0.8.1] - 2016-08-17 ### Changed - Finally converted the last unit error types to real error types (really now!). ## [0.8.0] - 2016-08-17 ### Changed - More error types. ## [0.7.0] - 2016-08-16 ### Changed - Error types now properly implement the Display and the Error trait. ## [0.6.2] - 2016-07-22 ### Changed - Mark all records as Send and Sync. ## [0.6.1] - 2016-07-20 ### Changed - Improved error messages. - Check existence of BAM when instantiating Readers. ## [0.6.0] - 2016-06-01 ### Changed - Improved handling of memory allocation for BCF and BAM records. - Fixed a memory leak occuring when creating a new BAM record (thanks to @andrelmartins).