# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.75.0"
name = "rustyms"
version = "0.9.0-alpha.3"
authors = [
    "Douwe Schulte <d.schulte@uu.nl>",
    "Ralf Gabriels",
    "Auke Heerdink",
]
build = false
include = [
    "src/**/*",
    "databases/**/*.gz",
    "README.md",
    "build.rs",
    "benches/**/*",
]
publish = true
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A library to handle proteomic mass spectrometry data and match peptides to spectra."
readme = "README.md"
keywords = [
    "spectra",
    "mass-spectrometry",
    "bio",
    "fragmentation",
    "proforma",
]
categories = ["science::bioinformatics::proteomics"]
license = "MIT OR Apache-2.0"
repository = "https://github.com/snijderlab/rustyms"

[lib]
name = "rustyms"
path = "src/lib.rs"

[[bench]]
name = "iai"
path = "benches/iai.rs"
harness = false

[dependencies.bincode]
version = "1.3"

[dependencies.flate2]
version = "1.0"

[dependencies.itertools]
version = "0.13"

[dependencies.mzdata]
version = "0.36"
optional = true

[dependencies.ndarray]
version = "0.16"
optional = true

[dependencies.ordered-float]
version = "4.5"
features = ["serde"]

[dependencies.probability]
version = "0.20"
optional = true

[dependencies.rand]
version = "0.8"
optional = true

[dependencies.rayon]
version = "1.9"
optional = true

[dependencies.regex]
version = "1.11"

[dependencies.serde]
version = "1.0"
features = [
    "derive",
    "rc",
]

[dependencies.similar]
version = "2.6"

[dependencies.thin-vec]
version = "0.2"
features = ["serde"]

[dependencies.uom]
version = "0.36"
features = [
    "use_serde",
    "usize",
    "isize",
]

[dev-dependencies.iai-callgrind]
version = "0.14"

[dev-dependencies.serde_json]
version = "1.0"

[features]
align = []
default = [
    "imgt",
    "align",
    "identification",
    "rayon",
    "isotopes",
    "rand",
    "mzdata",
]
identification = []
imgt = []
isotopes = [
    "probability",
    "ndarray",
]

[lints.rust.unexpected_cfgs]
level = "warn"
priority = 0
check-cfg = ["cfg(github_action)"]