[package]
name = "rustyms"
authors.workspace = true
edition.workspace = true
license.workspace = true
publish = true
rust-version.workspace = true
version.workspace = true
description = "A library to handle proteomic mass spectrometry data and match peptides to spectra."
categories = ["science::bioinformatics::proteomics"]
keywords = ["spectra", "mass-spectrometry", "bio", "fragmentation", "proforma"]
repository = "https://github.com/snijderlab/rustyms"
readme = "README.md"
include = [
    "src/**/*",
    "databases/**/*.gz",
    "README.md",
    "build.rs",
    "benches/**/*",
]

[dependencies]
bincode = { workspace = true }
flate2 = { workspace = true }
itertools = { workspace = true }
mzdata = { workspace = true, optional = true }
ndarray = { workspace = true, optional = true }
ordered-float = { workspace = true }
probability = { workspace = true, optional = true }
rand = { workspace = true, optional = true }
rayon = { workspace = true, optional = true }
regex = { workspace = true }
serde = { workspace = true }
similar = { workspace = true }
thin-vec = { workspace = true }
uom = { workspace = true }

[dev-dependencies]
iai-callgrind = { workspace = true }
serde_json = { workspace = true }

[features]
default = [
    "imgt",
    "align",
    "identification",
    "rayon",
    "isotopes",
    "rand",
    "mzdata",
]
imgt = []
align = []
identification = []
isotopes = ["probability", "ndarray"]

[[bench]]
name = "iai"
harness = false

[lints.rust]
unexpected_cfgs = { level = "warn", check-cfg = ['cfg(github_action)'] }