# This file is automatically @generated by Cargo. # It is not intended for manual editing. [[package]] name = "adler" version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ee2a4ec343196209d6594e19543ae87a39f96d5534d7174822a3ad825dd6ed7e" [[package]] name = "aho-corasick" version = "0.7.15" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7404febffaa47dac81aa44dba71523c9d069b1bdc50a77db41195149e17f68e5" dependencies = [ "memchr", ] [[package]] name = "ansi_term" version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ee49baf6cb617b853aa8d93bf420db2383fab46d314482ca2803b40d5fde979b" dependencies = [ "winapi", ] [[package]] name = "approx" version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f0e60b75072ecd4168020818c0107f2857bb6c4e64252d8d3983f6263b40a5c3" dependencies = [ "num-traits 0.2.14", ] [[package]] name = "assert_cmd" version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3dc1679af9a1ab4bea16f228b05d18f8363f8327b1fa8db00d2760cfafc6b61e" dependencies = [ "doc-comment", "predicates", "predicates-core", "predicates-tree", "wait-timeout", ] [[package]] name = "atty" version = "0.2.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8" dependencies = [ "hermit-abi", "libc", "winapi", ] [[package]] name = "autocfg" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a" [[package]] name = "bio" version = "0.30.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c7fce48b717091de0f9a342f380e9e5c44a753c98106ce422b757b839fe6d232" dependencies = [ "approx", "bio-types", "bit-set", "bv", "bytecount", "csv", "custom_derive", "fnv", "fxhash", "getset", "itertools", "itertools-num", "lazy_static", "multimap", "ndarray", "newtype_derive", "num-integer", "num-traits 0.2.14", "ordered-float", "petgraph", "quick-error", "regex", "serde", "serde_derive", "snafu", "statrs", "strum", "strum_macros", "vec_map", ] [[package]] name = "bio-types" version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9d4011aaa9f8bfece367ef7d23f23279710eacf7df462d92c5135eabeb82799b" dependencies = [ "derive-new", "lazy_static", "quick-error", "regex", "serde", "serde_derive", ] [[package]] name = "bit-set" version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6e11e16035ea35e4e5997b393eacbf6f63983188f7a2ad25bfb13465f5ad59de" dependencies = [ "bit-vec", ] [[package]] name = "bit-vec" version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb" [[package]] name = "bitflags" version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cf1de2fe8c75bc145a2f577add951f8134889b4795d47466a54a5c846d691693" [[package]] name = "bstr" version = "0.2.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "473fc6b38233f9af7baa94fb5852dca389e3d95b8e21c8e3719301462c5d9faf" dependencies = [ "lazy_static", "memchr", "regex-automata", "serde", ] [[package]] name = "bumpalo" version = "3.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2e8c087f005730276d1096a652e92a8bacee2e2472bcc9715a74d2bec38b5820" [[package]] name = "bv" version = "0.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340" dependencies = [ "feature-probe", "serde", ] [[package]] name = "bytecount" version = "0.6.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "72feb31ffc86498dacdbd0fcebb56138e7177a8cc5cea4516031d15ae85a742e" [[package]] name = "byteorder" version = "1.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "08c48aae112d48ed9f069b33538ea9e3e90aa263cfa3d1c24309612b1f7472de" [[package]] name = "cast" version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4b9434b9a5aa1450faa3f9cb14ea0e8c53bb5d2b3c1bfd1ab4fc03e9f33fbfb0" dependencies = [ "rustc_version 0.2.3", ] [[package]] name = "cc" version = "1.0.66" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4c0496836a84f8d0495758516b8621a622beb77c0fed418570e50764093ced48" dependencies = [ "jobserver", ] [[package]] name = "cfg-if" version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4785bdd1c96b2a846b2bd7cc02e86b6b3dbf14e7e53446c4f54c92a361040822" [[package]] name = "cfg-if" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "clap" version = "2.33.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "37e58ac78573c40708d45522f0d80fa2f01cc4f9b4e2bf749807255454312002" dependencies = [ "ansi_term", "atty", "bitflags", "strsim", "textwrap", "unicode-width", "vec_map", ] [[package]] name = "const_fn" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c478836e029dcef17fb47c89023448c64f781a046e0300e257ad8225ae59afab" [[package]] name = "crc32fast" version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "81156fece84ab6a9f2afdb109ce3ae577e42b1228441eded99bd77f627953b1a" dependencies = [ "cfg-if 1.0.0", ] [[package]] name = "criterion" version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "70daa7ceec6cf143990669a04c7df13391d55fb27bd4079d252fca774ba244d8" dependencies = [ "atty", "cast", "clap", "criterion-plot", "csv", "itertools", "lazy_static", "num-traits 0.2.14", "oorandom", "plotters", "rayon", "regex", "serde", "serde_cbor", "serde_derive", "serde_json", "tinytemplate", "walkdir", ] [[package]] name = "criterion-plot" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e022feadec601fba1649cfa83586381a4ad31c6bf3a9ab7d408118b05dd9889d" dependencies = [ "cast", "itertools", ] [[package]] name = "crossbeam-channel" version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dca26ee1f8d361640700bde38b2c37d8c22b3ce2d360e1fc1c74ea4b0aa7d775" dependencies = [ "cfg-if 1.0.0", "crossbeam-utils", ] [[package]] name = "crossbeam-deque" version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "94af6efb46fef72616855b036a624cf27ba656ffc9be1b9a3c931cfc7749a9a9" dependencies = [ "cfg-if 1.0.0", "crossbeam-epoch", "crossbeam-utils", ] [[package]] name = "crossbeam-epoch" version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a1aaa739f95311c2c7887a76863f500026092fb1dce0161dab577e559ef3569d" dependencies = [ "cfg-if 1.0.0", "const_fn", "crossbeam-utils", "lazy_static", "memoffset", "scopeguard", ] [[package]] name = "crossbeam-utils" version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "02d96d1e189ef58269ebe5b97953da3274d83a93af647c2ddd6f9dab28cedb8d" dependencies = [ "autocfg", "cfg-if 1.0.0", "lazy_static", ] [[package]] name = "csv" version = "1.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f9d58633299b24b515ac72a3f869f8b91306a3cec616a602843a383acd6f9e97" dependencies = [ "bstr", "csv-core", "itoa", "ryu", "serde", ] [[package]] name = "csv-core" version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90" dependencies = [ "memchr", ] [[package]] name = "custom_derive" version = "0.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9" [[package]] name = "derive-new" version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "71f31892cd5c62e414316f2963c5689242c43d8e7bbcaaeca97e5e28c95d91d9" dependencies = [ "proc-macro2", "quote", "syn", ] [[package]] name = "difference" version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "524cbf6897b527295dff137cec09ecf3a05f4fddffd7dfcd1585403449e74198" [[package]] name = "doc-comment" version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fea41bba32d969b513997752735605054bc0dfa92b4c56bf1189f2e174be7a10" [[package]] name = "either" version = "1.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457" [[package]] name = "enum_primitive" version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "be4551092f4d519593039259a9ed8daedf0da12e5109c5280338073eaeb81180" dependencies = [ "num-traits 0.1.43", ] [[package]] name = "env_logger" version = "0.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "44533bbbb3bb3c1fa17d9f2e4e38bbbaf8396ba82193c4cb1b6445d711445d36" dependencies = [ "log", ] [[package]] name = "feature-probe" version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da" [[package]] name = "fishers_exact" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "64993467e77edcbfce160dae38337b4c538aa0e8027039c6eabba8fa335c7b1e" [[package]] name = "fixedbitset" version = "0.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "86d4de0081402f5e88cdac65c8dcdcc73118c1a7a465e2a05f0da05843a8ea33" [[package]] name = "flate2" version = "1.0.19" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7411863d55df97a419aa64cb4d2f167103ea9d767e2c54a1868b7ac3f6b47129" dependencies = [ "cfg-if 1.0.0", "crc32fast", "libc", "miniz_oxide", ] [[package]] name = "float-cmp" version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e1267f4ac4f343772758f7b1bdcbe767c218bbab93bb432acbf5162bbf85a6c4" dependencies = [ "num-traits 0.2.14", ] [[package]] name = "fnv" version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" [[package]] name = "form_urlencoded" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ece68d15c92e84fa4f19d3780f1294e5ca82a78a6d515f1efaabcc144688be00" dependencies = [ "matches", "percent-encoding", ] [[package]] name = "fs-utils" version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593" dependencies = [ "quick-error", ] [[package]] name = "fxhash" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c" dependencies = [ "byteorder", ] [[package]] name = "getrandom" version = "0.1.15" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fc587bc0ec293155d5bfa6b9891ec18a1e330c234f896ea47fbada4cadbe47e6" dependencies = [ "cfg-if 0.1.10", "libc", "wasi", ] [[package]] name = "getset" version = "0.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5bb3f5b7d8d70c9bd23cf29b2b38094661418fb0ea79f1b0cc2019a11d6f5429" dependencies = [ "proc-macro2", "quote", "syn", ] [[package]] name = "glob" version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574" [[package]] name = "half" version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d36fab90f82edc3c747f9d438e06cf0a491055896f2a279638bb5beed6c40177" [[package]] name = "heck" version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "20564e78d53d2bb135c343b3f47714a56af2061f1c928fdb541dc7b9fdd94205" dependencies = [ "unicode-segmentation", ] [[package]] name = "hermit-abi" version = "0.1.17" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5aca5565f760fb5b220e499d72710ed156fdb74e631659e99377d9ebfbd13ae8" dependencies = [ "libc", ] [[package]] name = "hts-sys" version = "1.10.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7548557013f78aeae1ed2cb5cd2417f4f95d224c875da445facc516a16d914e5" dependencies = [ "cc", "fs-utils", "glob", "libz-sys", ] [[package]] name = "idna" version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "02e2673c30ee86b5b96a9cb52ad15718aa1f966f5ab9ad54a8b95d5ca33120a9" dependencies = [ "matches", "unicode-bidi", "unicode-normalization", ] [[package]] name = "ieee754" version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c" [[package]] name = "itertools" version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "284f18f85651fe11e8a991b2adb42cb078325c996ed026d994719efcfca1d54b" dependencies = [ "either", ] [[package]] name = "itertools-num" version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7" dependencies = [ "num-traits 0.2.14", ] [[package]] name = "itoa" version = "0.4.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dc6f3ad7b9d11a0c00842ff8de1b60ee58661048eb8049ed33c73594f359d7e6" [[package]] name = "jobserver" version = "0.1.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5c71313ebb9439f74b00d9d2dcec36440beaf57a6aa0623068441dd7cd81a7f2" dependencies = [ "libc", ] [[package]] name = "js-sys" version = "0.3.46" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cf3d7383929f7c9c7c2d0fa596f325832df98c3704f2c60553080f7127a58175" dependencies = [ "wasm-bindgen", ] [[package]] name = "lazy_static" version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" version = "0.2.80" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4d58d1b70b004888f764dfbf6a26a3b0342a1632d33968e4a179d8011c760614" [[package]] name = "libz-sys" version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "602113192b08db8f38796c4e85c39e960c145965140e918018bcde1952429655" dependencies = [ "cc", "libc", "pkg-config", "vcpkg", ] [[package]] name = "linear-map" version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee" [[package]] name = "log" version = "0.4.11" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4fabed175da42fed1fa0746b0ea71f412aa9d35e76e95e59b192c64b9dc2bf8b" dependencies = [ "cfg-if 0.1.10", ] [[package]] name = "matches" version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7ffc5c5338469d4d3ea17d269fa8ea3512ad247247c30bd2df69e68309ed0a08" [[package]] name = "matrixmultiply" version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d4f7ec66360130972f34830bfad9ef05c6610a43938a467bcc9ab9369ab3478f" dependencies = [ "rawpointer", ] [[package]] name = "memchr" version = "2.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0ee1c47aaa256ecabcaea351eae4a9b01ef39ed810004e298d2511ed284b1525" [[package]] name = "memoffset" version = "0.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "157b4208e3059a8f9e78d559edc658e13df41410cb3ae03979c83130067fdd87" dependencies = [ "autocfg", ] [[package]] name = "miniz_oxide" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0f2d26ec3309788e423cfbf68ad1800f061638098d76a83681af979dc4eda19d" dependencies = [ "adler", "autocfg", ] [[package]] name = "multimap" version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "de234f818d54830a7103b9be18ad0861d75aeb5e3c89759bc3f9a004cc39cfa3" dependencies = [ "serde", ] [[package]] name = "ndarray" version = "0.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac06db03ec2f46ee0ecdca1a1c34a99c0d188a0d83439b84bf0cb4b386e4ab09" dependencies = [ "matrixmultiply", "num-complex", "num-integer", "num-traits 0.2.14", "rawpointer", ] [[package]] name = "newtype_derive" version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec" dependencies = [ "rustc_version 0.1.7", ] [[package]] name = "niffler" version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d4db46e50391e940cfc78fd9927030b842e8a5aad10b97011e3701fec80c8368" dependencies = [ "cfg-if 0.1.10", "enum_primitive", "flate2", "thiserror", ] [[package]] name = "normalize-line-endings" version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "61807f77802ff30975e01f4f071c8ba10c022052f98b3294119f3e615d13e5be" [[package]] name = "num-complex" version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b6b19411a9719e753aff12e5187b74d60d3dc449ec3f4dc21e3989c3f554bc95" dependencies = [ "autocfg", "num-traits 0.2.14", ] [[package]] name = "num-integer" version = "0.1.44" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d2cc698a63b549a70bc047073d2949cce27cd1c7b0a4a862d08a8031bc2801db" dependencies = [ "autocfg", "num-traits 0.2.14", ] [[package]] name = "num-traits" version = "0.1.43" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "92e5113e9fd4cc14ded8e499429f396a20f98c772a47cc8622a736e1ec843c31" dependencies = [ "num-traits 0.2.14", ] [[package]] name = "num-traits" version = "0.2.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9a64b1ec5cda2586e284722486d802acf1f7dbdc623e2bfc57e65ca1cd099290" dependencies = [ "autocfg", ] [[package]] name = "num_cpus" version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "05499f3756671c15885fee9034446956fff3f243d6077b91e5767df161f766b3" dependencies = [ "hermit-abi", "libc", ] [[package]] name = "oorandom" version = "11.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0ab1bc2a289d34bd04a330323ac98a1b4bc82c9d9fcb1e66b63caa84da26b575" [[package]] name = "ordered-float" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3741934be594d77de1c8461ebcbbe866f585ea616a9753aa78f2bdc69f0e4579" dependencies = [ "num-traits 0.2.14", ] [[package]] name = "ordermap" version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a86ed3f5f244b372d6b1a00b72ef7f8876d0bc6a78a4c9985c53614041512063" [[package]] name = "percent-encoding" version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d4fd5641d01c8f18a23da7b6fe29298ff4b55afcccdf78973b24cf3175fee32e" [[package]] name = "petgraph" version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9c3659d1ee90221741f65dd128d9998311b0e40c5d3c23a62445938214abce4f" dependencies = [ "fixedbitset", "ordermap", ] [[package]] name = "pkg-config" version = "0.3.19" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3831453b3449ceb48b6d9c7ad7c96d5ea673e9b470a1dc578c2ce6521230884c" [[package]] name = "plotters" version = "0.2.15" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0d1685fbe7beba33de0330629da9d955ac75bd54f33d7b79f9a895590124f6bb" dependencies = [ "js-sys", "num-traits 0.2.14", "wasm-bindgen", "web-sys", ] [[package]] name = "ppv-lite86" version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac74c624d6b2d21f425f752262f42188365d7b8ff1aff74c82e45136510a4857" [[package]] name = "predicates" version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "96bfead12e90dccead362d62bb2c90a5f6fc4584963645bc7f71a735e0b0735a" dependencies = [ "difference", "float-cmp", "normalize-line-endings", "predicates-core", "regex", ] [[package]] name = "predicates-core" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "06075c3a3e92559ff8929e7a280684489ea27fe44805174c3ebd9328dcb37178" [[package]] name = "predicates-tree" version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8e63c4859013b38a76eca2414c64911fba30def9e3202ac461a2d22831220124" dependencies = [ "predicates-core", "treeline", ] [[package]] name = "proc-macro-error" version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c" dependencies = [ "proc-macro-error-attr", "proc-macro2", "quote", "syn", "version_check", ] [[package]] name = "proc-macro-error-attr" version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869" dependencies = [ "proc-macro2", "quote", "version_check", ] [[package]] name = "proc-macro2" version = "1.0.24" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e0704ee1a7e00d7bb417d0770ea303c1bccbabf0ef1667dae92b5967f5f8a71" dependencies = [ "unicode-xid", ] [[package]] name = "quick-error" version = "1.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0" [[package]] name = "quote" version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "aa563d17ecb180e500da1cfd2b028310ac758de548efdd203e18f283af693f37" dependencies = [ "proc-macro2", ] [[package]] name = "rand" version = "0.7.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6a6b1679d49b24bbfe0c803429aa1874472f50d9b363131f0e89fc356b544d03" dependencies = [ "getrandom", "libc", "rand_chacha", "rand_core", "rand_hc", ] [[package]] name = "rand_chacha" version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f4c8ed856279c9737206bf725bf36935d8666ead7aa69b52be55af369d193402" dependencies = [ "ppv-lite86", "rand_core", ] [[package]] name = "rand_core" version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "90bde5296fc891b0cef12a6d03ddccc162ce7b2aff54160af9338f8d40df6d19" dependencies = [ "getrandom", ] [[package]] name = "rand_hc" version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ca3129af7b92a17112d59ad498c6f81eaf463253766b90396d39ea7a39d6613c" dependencies = [ "rand_core", ] [[package]] name = "rawpointer" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" [[package]] name = "rayon" version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8b0d8e0819fadc20c74ea8373106ead0600e3a67ef1fe8da56e39b9ae7275674" dependencies = [ "autocfg", "crossbeam-deque", "either", "rayon-core", ] [[package]] name = "rayon-core" version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9ab346ac5921dc62ffa9f89b7a773907511cdfa5490c572ae9be1be33e8afa4a" dependencies = [ "crossbeam-channel", "crossbeam-deque", "crossbeam-utils", "lazy_static", "num_cpus", ] [[package]] name = "regex" version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "38cf2c13ed4745de91a5eb834e11c00bcc3709e773173b2ce4c56c9fbde04b9c" dependencies = [ "aho-corasick", "memchr", "regex-syntax", "thread_local", ] [[package]] name = "regex-automata" version = "0.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ae1ded71d66a4a97f5e961fd0cb25a5f366a42a41570d16a763a69c092c26ae4" dependencies = [ "byteorder", ] [[package]] name = "regex-syntax" version = "0.6.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3b181ba2dcf07aaccad5448e8ead58db5b742cf85dfe035e2227f137a539a189" [[package]] name = "rust-htslib" version = "0.31.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f666fd1be16d0c5172079e3d75829ff6e75ec05babc808c2d178a761000c0bfe" dependencies = [ "bio-types", "custom_derive", "hts-sys", "ieee754", "lazy_static", "libc", "linear-map", "newtype_derive", "regex", "thiserror", "url", ] [[package]] name = "rustc_version" version = "0.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084" dependencies = [ "semver 0.1.20", ] [[package]] name = "rustc_version" version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "138e3e0acb6c9fb258b19b67cb8abd63c00679d2851805ea151465464fe9030a" dependencies = [ "semver 0.9.0", ] [[package]] name = "rustynuc" version = "0.3.0" dependencies = [ "assert_cmd", "bio", "criterion", "env_logger", "fishers_exact", "lazy_static", "log", "niffler", "predicates", "rayon", "regex", "rust-htslib", "structopt", "thiserror", "walkdir", ] [[package]] name = "ryu" version = "1.0.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "71d301d4193d031abdd79ff7e3dd721168a9572ef3fe51a1517aba235bd8f86e" [[package]] name = "same-file" version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "93fc1dc3aaa9bfed95e02e6eadabb4baf7e3078b0bd1b4d7b6b0b68378900502" dependencies = [ "winapi-util", ] [[package]] name = "scopeguard" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd" [[package]] name = "semver" version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac" [[package]] name = "semver" version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1d7eb9ef2c18661902cc47e535f9bc51b78acd254da71d375c2f6720d9a40403" dependencies = [ "semver-parser", ] [[package]] name = "semver-parser" version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "388a1df253eca08550bef6c72392cfe7c30914bf41df5269b68cbd6ff8f570a3" [[package]] name = "serde" version = "1.0.118" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "06c64263859d87aa2eb554587e2d23183398d617427327cf2b3d0ed8c69e4800" dependencies = [ "serde_derive", ] [[package]] name = "serde_cbor" version = "0.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e18acfa2f90e8b735b2836ab8d538de304cbb6729a7360729ea5a895d15a622" dependencies = [ "half", "serde", ] [[package]] name = "serde_derive" version = "1.0.118" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c84d3526699cd55261af4b941e4e725444df67aa4f9e6a3564f18030d12672df" dependencies = [ "proc-macro2", "quote", "syn", ] [[package]] name = "serde_json" version = "1.0.60" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1500e84d27fe482ed1dc791a56eddc2f230046a040fa908c08bda1d9fb615779" dependencies = [ "itoa", "ryu", "serde", ] [[package]] name = "snafu" version = "0.6.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "eab12d3c261b2308b0d80c26fffb58d17eba81a4be97890101f416b478c79ca7" dependencies = [ "doc-comment", "snafu-derive", ] [[package]] name = "snafu-derive" version = "0.6.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1508efa03c362e23817f96cde18abed596a25219a8b2c66e8db33c03543d315b" dependencies = [ "proc-macro2", "quote", "syn", ] [[package]] name = "statrs" version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cce16f6de653e88beca7bd13780d08e09d4489dbca1f9210e041bc4852481382" dependencies = [ "rand", ] [[package]] name = "strsim" version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8ea5119cdb4c55b55d432abb513a0429384878c15dde60cc77b1c99de1a95a6a" [[package]] name = "structopt" version = "0.3.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5277acd7ee46e63e5168a80734c9f6ee81b1367a7d8772a2d765df2a3705d28c" dependencies = [ "clap", "lazy_static", "structopt-derive", ] [[package]] name = "structopt-derive" version = "0.4.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5ba9cdfda491b814720b6b06e0cac513d922fc407582032e8706e9f137976f90" dependencies = [ "heck", "proc-macro-error", "proc-macro2", "quote", "syn", ] [[package]] name = "strum" version = "0.18.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "57bd81eb48f4c437cadc685403cad539345bf703d78e63707418431cecd4522b" [[package]] name = "strum_macros" version = "0.18.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "87c85aa3f8ea653bfd3ddf25f7ee357ee4d204731f6aa9ad04002306f6e2774c" dependencies = [ "heck", "proc-macro2", "quote", "syn", ] [[package]] name = "syn" version = "1.0.53" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8833e20724c24de12bbaba5ad230ea61c3eafb05b881c7c9d3cfe8638b187e68" dependencies = [ "proc-macro2", "quote", "unicode-xid", ] [[package]] name = "textwrap" version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d326610f408c7a4eb6f51c37c330e496b08506c9457c9d34287ecc38809fb060" dependencies = [ "unicode-width", ] [[package]] name = "thiserror" version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0e9ae34b84616eedaaf1e9dd6026dbe00dcafa92aa0c8077cb69df1fcfe5e53e" dependencies = [ "thiserror-impl", ] [[package]] name = "thiserror-impl" version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9ba20f23e85b10754cd195504aebf6a27e2e6cbe28c17778a0c930724628dd56" dependencies = [ "proc-macro2", "quote", "syn", ] [[package]] name = "thread_local" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d40c6d1b69745a6ec6fb1ca717914848da4b44ae29d9b3080cbee91d72a69b14" dependencies = [ "lazy_static", ] [[package]] name = "tinytemplate" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6d3dc76004a03cec1c5932bca4cdc2e39aaa798e3f82363dd94f9adf6098c12f" dependencies = [ "serde", "serde_json", ] [[package]] name = "tinyvec" version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ccf8dbc19eb42fba10e8feaaec282fb50e2c14b2726d6301dbfeed0f73306a6f" dependencies = [ "tinyvec_macros", ] [[package]] name = "tinyvec_macros" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cda74da7e1a664f795bb1f8a87ec406fb89a02522cf6e50620d016add6dbbf5c" [[package]] name = "treeline" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a7f741b240f1a48843f9b8e0444fb55fb2a4ff67293b50a9179dfd5ea67f8d41" [[package]] name = "unicode-bidi" version = "0.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "49f2bd0c6468a8230e1db229cff8029217cf623c767ea5d60bfbd42729ea54d5" dependencies = [ "matches", ] [[package]] name = "unicode-normalization" version = "0.1.16" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a13e63ab62dbe32aeee58d1c5408d35c36c392bba5d9d3142287219721afe606" dependencies = [ "tinyvec", ] [[package]] name = "unicode-segmentation" version = "1.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bb0d2e7be6ae3a5fa87eed5fb451aff96f2573d2694942e40543ae0bbe19c796" [[package]] name = "unicode-width" version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9337591893a19b88d8d87f2cec1e73fad5cdfd10e5a6f349f498ad6ea2ffb1e3" [[package]] name = "unicode-xid" version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f7fe0bb3479651439c9112f72b6c505038574c9fbb575ed1bf3b797fa39dd564" [[package]] name = "url" version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5909f2b0817350449ed73e8bcd81c8c3c8d9a7a5d8acba4b27db277f1868976e" dependencies = [ "form_urlencoded", "idna", "matches", "percent-encoding", ] [[package]] name = "vcpkg" version = "0.2.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6454029bf181f092ad1b853286f23e2c507d8e8194d01d92da4a55c274a5508c" [[package]] name = "vec_map" version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191" dependencies = [ "serde", ] [[package]] name = "version_check" version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b5a972e5669d67ba988ce3dc826706fb0a8b01471c088cb0b6110b805cc36aed" [[package]] name = "wait-timeout" version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9f200f5b12eb75f8c1ed65abd4b2db8a6e1b138a20de009dacee265a2498f3f6" dependencies = [ "libc", ] [[package]] name = "walkdir" version = "2.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "777182bc735b6424e1a57516d35ed72cb8019d85c8c9bf536dccb3445c1a2f7d" dependencies = [ "same-file", "winapi", "winapi-util", ] [[package]] name = "wasi" version = "0.9.0+wasi-snapshot-preview1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cccddf32554fecc6acb585f82a32a72e28b48f8c4c1883ddfeeeaa96f7d8e519" [[package]] name = "wasm-bindgen" version = "0.2.69" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3cd364751395ca0f68cafb17666eee36b63077fb5ecd972bbcd74c90c4bf736e" dependencies = [ "cfg-if 1.0.0", "wasm-bindgen-macro", ] [[package]] name = "wasm-bindgen-backend" version = "0.2.69" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1114f89ab1f4106e5b55e688b828c0ab0ea593a1ea7c094b141b14cbaaec2d62" dependencies = [ "bumpalo", "lazy_static", "log", "proc-macro2", "quote", "syn", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-macro" version = "0.2.69" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7a6ac8995ead1f084a8dea1e65f194d0973800c7f571f6edd70adf06ecf77084" dependencies = [ "quote", "wasm-bindgen-macro-support", ] [[package]] name = "wasm-bindgen-macro-support" version = "0.2.69" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b5a48c72f299d80557c7c62e37e7225369ecc0c963964059509fbafe917c7549" dependencies = [ "proc-macro2", "quote", "syn", "wasm-bindgen-backend", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-shared" version = "0.2.69" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7e7811dd7f9398f14cc76efd356f98f03aa30419dea46aa810d71e819fc97158" [[package]] name = "web-sys" version = "0.3.46" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "222b1ef9334f92a21d3fb53dc3fd80f30836959a90f9274a626d7e06315ba3c3" dependencies = [ "js-sys", "wasm-bindgen", ] [[package]] name = "winapi" version = "0.3.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419" dependencies = [ "winapi-i686-pc-windows-gnu", "winapi-x86_64-pc-windows-gnu", ] [[package]] name = "winapi-i686-pc-windows-gnu" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" [[package]] name = "winapi-util" version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" dependencies = [ "winapi", ] [[package]] name = "winapi-x86_64-pc-windows-gnu" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"