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[package]
edition = "2018"
name = "rustynuc"
version = "0.3.0"
authors = ["Johnny Debebe johnny.debebe@nottingham.ac.uk"]
exclude = ["static/*", "justfile", ".github/*", ".git/*", "sass/*", "public/*", "content/*", "templates/*", "themes/*"]
description = "Quick analysis of pileups for likely 8-oxoG locations"
readme = "README.md"
keywords = ["bioinformatics", "pileup", "OxoG", "8-oxoG", "bio"]
categories = ["command-line-utilities"]
license = "MIT"
repository = "https://github.com/bjohnnyd/rustynuc"

[[bench]]
name = "benchmark"
harness = false
[dependencies.bio]
version = "0.30.1"

[dependencies.env_logger]
version = "0.7.1"
default-features = false

[dependencies.fishers_exact]
version = "1.0.1"

[dependencies.log]
version = "0.4.8"

[dependencies.niffler]
version = "2.2.0"
features = ["gz"]
default-features = false

[dependencies.rayon]
version = "1.3.1"

[dependencies.rust-htslib]
version = "0.31.0"
default-features = false

[dependencies.structopt]
version = "0.3.14"

[dependencies.thiserror]
version = "1.0.20"
[dev-dependencies.assert_cmd]
version = "1.0.1"

[dev-dependencies.criterion]
version = "0.3.3"

[dev-dependencies.lazy_static]
version = "1.4.0"

[dev-dependencies.predicates]
version = "1.0.4"

[dev-dependencies.regex]
version = "1.4.2"

[dev-dependencies.walkdir]
version = "2.3.1"