# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "scattr"
version = "0.2.1"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A tool for estimating the copy number of large tandem repeats"
readme = "README.md"
keywords = [
    "genomics",
    "genotyping",
    "bioinformatics",
    "biology",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/rashidalabri/scattr"

[lib]
name = "scattr"
path = "src/lib.rs"

[[bin]]
name = "scattr"
path = "src/main.rs"

[dependencies.aho-corasick]
version = "1.1.2"

[dependencies.anyhow]
version = "1.0.80"

[dependencies.argmin]
version = "0.10.0"
features = [
    "serde1",
    "rayon",
]

[dependencies.argmin-math]
version = "0.4.0"

[dependencies.argmin-observer-paramwriter]
version = "0.1.0"

[dependencies.argmin-observer-slog]
version = "0.1.0"

[dependencies.bio]
version = "1.5.0"

[dependencies.clap]
version = "4.5.1"
features = ["derive"]

[dependencies.csv]
version = "1.3.0"

[dependencies.exitcode]
version = "1.1.2"

[dependencies.indexmap]
version = "2.2.3"

[dependencies.log]
version = "0.4.20"

[dependencies.ndarray]
version = "0.15.6"

[dependencies.ndarray-ndimage]
version = "0.4.0"

[dependencies.rand]
version = "0.8.5"
features = ["small_rng"]

[dependencies.rand_xoshiro]
version = "0.6.0"

[dependencies.rayon]
version = "1.8.1"

[dependencies.rust-htslib]
version = "0.46.0"

[dependencies.serde]
version = "1.0.197"

[dependencies.serde_json]
version = "1.0.114"

[dependencies.slog]
version = "2.7.0"

[dependencies.slog-async]
version = "2.8.0"

[dependencies.slog-scope]
version = "4.4.0"

[dependencies.slog-stdlog]
version = "4.1.1"

[dependencies.slog-term]
version = "2.9.1"

[dependencies.statrs]
version = "0.17.1"