[ { "id": "test_locus", "contig": "test_genome", "start": 100000, "end": 100018, "motif": "CAGATA", "left_flank": "TCGACGGGCAAACTCTTAAGGGGATAAATGCCCCTAGGGGTATGGTAATAAAAAGCCTATATTCCATGTTCCTTTAATTATTTTTAGTATACAATCTGTGGGTAACCTCGTTGGAGACTCTCACTTCAATTCGGGTCTCGTGGACCCTTACTACTTAACGCCCAATCTAAACCGACTCTAAAAATCCTAAGGATTTTTGGACGGCTCCCTTTCCTTCAGTAAATGACGTCTTTTGGTGTACCGTCGCTGCCCTTATGGACCGTATTCTTATGTCCAGTAGACTGCCACCAAACTGCATGCGCCCAAGAACGCATGCGTGATGCGTCTTCAGCGATGTTGAACGTCCCCTTTCATCACCGGATAAGCATGCTAGATAAGAGTCCATCAACAACGAGCCTAGGTTGCTCATCGATGCCAAGCTCGAACCGTGTGCTGCAGCAGAGGAGTACCAGTGGGACACTCACGGCAACAGATAAGTATGACAGACCCAGCTTAAGTGCGATCAAGTGTGCCCGGGGGAACGGGGCCTCTACCGCGGAAATTAAGTTCTGTCTCATTCGGAGCTGTTTAATGATTTCCCGTCTAGAGCAATTTAACATATTAATGGGGATCCACAGCAGAAATGCCTACACCTGATCAGTCTGTGCGCGTTAGGAAGACGCGCCGAGGTCTATGGAGTGTCATGAGTTCACCTTGATATTAACATCTACAGCAACCTACTTGTATACCAAGCAGGTGTACCGGCCCCTGGAGACGTTGAGAGCTATGCACCTGCGACGAACACAAGAGTCGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGT", "right_flank": "CCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTCGAAACCAGGTCCTATATAGGCCCCTACAGAATAAAGGGAGTACTCAGACGGTATGACCTGGCAGGACTTACTTAGGACGACATCCTCCTCAGGTAGGTCTACTTACGCAGCTTAGTGTACTGAGACTACTACCAATTGAACATTCACACCTTGCGACGCTTCAGACACCGTATGTTTATACGTTTAGGTCCGAGACCTGTGTAAGTAACCGATTTGCCGACGTTTTAGCTTCATAGTGCTTCGGGCTAAGACAAAGGATCGAGGGACCGCCTGCCATGATAGATGAGATCCGGCTGCCAGCATAACAGCAATGCACAGGTACGGGTAGGCGATTGAAGGTATTGTCGCCGCCCGAAAAGTCTTAGGTTCCATTTAGAGATCTCCCGGCCAGAATTTCACAGCTCGTCTGTGTTCGACAACGAGATCGCCTAGCCAAGTTACTACCAGGATTGTGTACCATCCCCACCGGCAAATTGATGAGTCGCGGATTCACGAGCGTCCGTGCCTTGAGGCAGATTGTTAAAAGCAGTGGACATAGCTAACGTGCGTCATTATTGAGCAGTAGCTATGGAACAATGGTTGTAGTTAGTACCCAGCATGCCCATTTGCACGTACTGAATGTCTGCATTCGATTGCCCACCCGTCATGGTATCATATCCAACCCGCCTCACCCCAGGACGGTGGTTCCCTTACGAGGGCCGCCCCTTAACTAGCTAGAGTCGATGGTCAGTCGTATGTCCAACTGGCAAGTAAGCCACCTATCGGCCCCCGCTATAAGCCAAGGTCACCGACAAAGTTATCGCATTCGCCACTTACCGATATTTTGGTTAGCCAGTCCCTCACTTCTATCTCAATAGGGGGGGCCTTGTCATACGATGTGCGGGACCAACCTACAATAGCGGTTATTAGGTGCGGTACTACAGCACCGTAGTGCGATGTGTGCTTACCAGAGTACGCGAAAGCTCGATGTTTTGACAACTTAACGGACCGAGGACAAGGCGCAATAAGACTATCAAATCACCTCATCGGCTCACGAAACTTGATCAGAGGCCAGGAGGTACAAAACATACTCTACTATCCCGCTTCCTGAACAGCGGGTGTATCTACTCGATGTCCGTTCGCAGCTTTGTAAAGTTC", "reads": [ { "qname": "test_genome-hap13547", "source_contig": "test_genome", "source_pos": 100350, "mapq": 60, "seq": "TACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 332): 0)" ] }, { "qname": "test_genome-hap13547", "source_contig": "test_genome", "source_pos": 100080, "mapq": 60, "seq": "GATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTGGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 62): 1)" ] }, { "qname": "test_genome-hap17893", "source_contig": "test_genome", "source_pos": 99307, "mapq": 60, "seq": "GGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -693): 0)" ] }, { "qname": "test_genome-hap17893", "source_contig": "test_genome", "source_pos": 99614, "mapq": 60, "seq": "AACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCATTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -386): 1)" ] }, { "qname": "test_genome-hap217699", "source_contig": "test_genome", "source_pos": 100342, "mapq": 60, "seq": "GCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 324): 0)" ] }, { "qname": "test_genome-hap217699", "source_contig": "test_genome", "source_pos": 100118, "mapq": 60, "seq": "TGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 100): 0)" ] }, { "qname": "test_genome-hap111089", "source_contig": "test_genome", "source_pos": 99688, "mapq": 60, "seq": "ATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCTAGAAAGAGTGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -312): 1)" ] }, { "qname": "test_genome-hap111089", "source_contig": "test_genome", "source_pos": 99414, "mapq": 60, "seq": "TACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -586): 0)" ] }, { "qname": "test_genome-hap111353", "source_contig": "test_genome", "source_pos": 99968, "mapq": 60, "seq": "TTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, -50): 21)" ] }, { "qname": "test_genome-hap111353", "source_contig": "test_genome", "source_pos": 99716, "mapq": 60, "seq": "GACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -284): 0)" ] }, { "qname": "test_genome-hap28081", "source_contig": "test_genome", "source_pos": 100465, "mapq": 60, "seq": "ATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTCAGCTGCGTAAGTAGACCTACCTGAGGAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 447): 1)" ] }, { "qname": "test_genome-hap28081", "source_contig": "test_genome", "source_pos": 100129, "mapq": 60, "seq": "ACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACAGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 111): 1)" ] }, { "qname": "test_genome-hap27643", "source_contig": "test_genome", "source_pos": 99932, "mapq": 60, "seq": "CTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -68): 0)" ] }, { "qname": "test_genome-hap27643", "source_contig": "test_genome", "source_pos": 99932, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 3): 0)" ] }, { "qname": "test_genome-hap24579", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 5): 0)" ] }, { "qname": "test_genome-hap24579", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "AGGTACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACATAAACAGATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 3)", "(WithinRepeat(Forward, 1): 3)" ] }, { "qname": "test_genome-hap12021", "source_contig": "test_genome", "source_pos": 99918, "mapq": 60, "seq": "ACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGAGGTTTGTGTATCGAGGCAAGCGCAAATACCTAGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -82): 33)" ] }, { "qname": "test_genome-hap12021", "source_contig": "test_genome", "source_pos": 100241, "mapq": 60, "seq": "ACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCGCCTTATACTCAATCGTATTGTAGGACACGGCCCGCCGCGGTTTGAAGGCACGCGCAACAACAGGTGACT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 223): 3)" ] }, { "qname": "test_genome-hap211581", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "ACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, -44): 0)" ] }, { "qname": "test_genome-hap211581", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "AGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACTGATACAGATACAGATACAGATACAGATACAGATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 1)", "(WithinRepeat(Forward, 1): 1)" ] }, { "qname": "test_genome-hap213871", "source_contig": "test_genome", "source_pos": 99709, "mapq": 60, "seq": "CGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGCCGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -291): 1)" ] }, { "qname": "test_genome-hap213871", "source_contig": "test_genome", "source_pos": 99371, "mapq": 60, "seq": "TTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAACAGAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCTACACTTCACTGAATGGATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -629): 2)" ] }, { "qname": "test_genome-hap25199", "source_contig": "test_genome", "source_pos": 100181, "mapq": 60, "seq": "GGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 163): 0)" ] }, { "qname": "test_genome-hap25199", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "AGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATTC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 1)", "(WithinRepeat(Forward, 1): 1)" ] }, { "qname": "test_genome-hap25107", "source_contig": "test_genome", "source_pos": 99905, "mapq": 0, "seq": "TATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 0): 0)" ] }, { "qname": "test_genome-hap25107", "source_contig": "test_genome", "source_pos": 99905, "mapq": 60, "seq": "CCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGTTACAGATACAGATACAGATACAGATACAGATACTGATACAGATACAGATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -95): 2)" ] }, { "qname": "test_genome-hap25319", "source_contig": "test_genome", "source_pos": 99506, "mapq": 60, "seq": "TTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -494): 0)" ] }, { "qname": "test_genome-hap25319", "source_contig": "test_genome", "source_pos": 99809, "mapq": 60, "seq": "GTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -191): 0)" ] }, { "qname": "test_genome-hap14757", "source_contig": "test_genome", "source_pos": 100002, "mapq": 60, "seq": "GATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, -16): 0)" ] }, { "qname": "test_genome-hap14757", "source_contig": "test_genome", "source_pos": 100330, "mapq": 60, "seq": "GACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTTAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 312): 1)" ] }, { "qname": "test_genome-hap18399", "source_contig": "test_genome", "source_pos": 99721, "mapq": 60, "seq": "AGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -279): 0)" ] }, { "qname": "test_genome-hap18399", "source_contig": "test_genome", "source_pos": 99534, "mapq": 60, "seq": "TCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCAACAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -466): 1)" ] }, { "qname": "test_genome-hap22661", "source_contig": "test_genome", "source_pos": 100465, "mapq": 60, "seq": "ATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 447): 0)" ] }, { "qname": "test_genome-hap22661", "source_contig": "test_genome", "source_pos": 100162, "mapq": 60, "seq": "CATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 144): 0)" ] }, { "qname": "test_genome-hap26035", "source_contig": "test_genome", "source_pos": 99598, "mapq": 60, "seq": "TTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -402): 0)" ] }, { "qname": "test_genome-hap26035", "source_contig": "test_genome", "source_pos": 99968, "mapq": 60, "seq": "TCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -32): 0)" ] }, { "qname": "test_genome-hap18165", "source_contig": "test_genome", "source_pos": 99823, "mapq": 60, "seq": "GCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -177): 0)" ] }, { "qname": "test_genome-hap18165", "source_contig": "test_genome", "source_pos": 99600, "mapq": 60, "seq": "TGCTGCGGAAAATATAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -400): 1)" ] }, { "qname": "test_genome-hap15187", "source_contig": "test_genome", "source_pos": 99644, "mapq": 60, "seq": "CGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -356): 0)" ] }, { "qname": "test_genome-hap15187", "source_contig": "test_genome", "source_pos": 99981, "mapq": 60, "seq": "GTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGACGCCATCTTCACGACCCG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -37): 15)" ] }, { "qname": "test_genome-hap11243", "source_contig": "test_genome", "source_pos": 100367, "mapq": 60, "seq": "ATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 349): 0)" ] }, { "qname": "test_genome-hap11243", "source_contig": "test_genome", "source_pos": 99972, "mapq": 60, "seq": "CCCACGAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGTGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -46): 21)" ] }, { "qname": "test_genome-hap218633", "source_contig": "test_genome", "source_pos": 100083, "mapq": 60, "seq": "GGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 65): 0)" ] }, { "qname": "test_genome-hap218633", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TACAGATACAGATACAGATACTGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 4): 1)" ] }, { "qname": "test_genome-hap25797", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Forward, 4): 0)" ] }, { "qname": "test_genome-hap25797", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "TTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTTTCTGTATCTGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -60): 1)" ] }, { "qname": "test_genome-hap210841", "source_contig": "test_genome", "source_pos": 99768, "mapq": 60, "seq": "GGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -232): 0)" ] }, { "qname": "test_genome-hap210841", "source_contig": "test_genome", "source_pos": 99483, "mapq": 60, "seq": "GGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -517): 0)" ] }, { "qname": "test_genome-hap16335", "source_contig": "test_genome", "source_pos": 100136, "mapq": 60, "seq": "TAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 118): 0)" ] }, { "qname": "test_genome-hap16335", "source_contig": "test_genome", "source_pos": 100499, "mapq": 60, "seq": "GGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATTAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTTGTCTCAGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 481): 2)" ] }, { "qname": "test_genome-hap114035", "source_contig": "test_genome", "source_pos": 100607, "mapq": 60, "seq": "CTAAATGGAACCTAAGACTTTTCGGGCGGCGACAATACCTTCAATCGCCTACCCGTACCTGTGCATTTCTGTTATGCTGGCAGCCGGATCTCATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 589): 1)" ] }, { "qname": "test_genome-hap114035", "source_contig": "test_genome", "source_pos": 100231, "mapq": 60, "seq": "CCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGTAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 213): 1)" ] }, { "qname": "test_genome-hap212887", "source_contig": "test_genome", "source_pos": 100164, "mapq": 60, "seq": "TCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 146): 0)" ] }, { "qname": "test_genome-hap212887", "source_contig": "test_genome", "source_pos": 100489, "mapq": 60, "seq": "TCCTTTGTCTTAGCCCGAACCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGGCTCAGTACACTAAGCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 471): 2)" ] }, { "qname": "test_genome-hap214937", "source_contig": "test_genome", "source_pos": 100005, "mapq": 0, "seq": "CAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Forward, 0): 0)" ] }, { "qname": "test_genome-hap214937", "source_contig": "test_genome", "source_pos": 100005, "mapq": 60, "seq": "ATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTTTGATGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTAGACGTCCTCGGTATCTGTATATGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -13): 3)" ] }, { "qname": "test_genome-hap2433", "source_contig": "test_genome", "source_pos": 99742, "mapq": 60, "seq": "GTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTATGCTACACGCGCCCAGTCAAACCAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -258): 1)" ] }, { "qname": "test_genome-hap2433", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTCTCTGTATCTGTATCTGTATCTGTACCTGTATCTGTATCTGTATCTGTATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 2): 2)" ] }, { "qname": "test_genome-hap218411", "source_contig": "test_genome", "source_pos": 99911, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTTTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 3): 1)" ] }, { "qname": "test_genome-hap218411", "source_contig": "test_genome", "source_pos": 99911, "mapq": 60, "seq": "AAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGAGACAGATACAGATACAGATACAGGTACAGATACAGATACAAATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -89): 3)" ] }, { "qname": "test_genome-hap22641", "source_contig": "test_genome", "source_pos": 99722, "mapq": 60, "seq": "AAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -278): 0)" ] }, { "qname": "test_genome-hap22641", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 2): 0)" ] }, { "qname": "test_genome-hap114965", "source_contig": "test_genome", "source_pos": 100477, "mapq": 60, "seq": "GCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 459): 0)" ] }, { "qname": "test_genome-hap114965", "source_contig": "test_genome", "source_pos": 100115, "mapq": 60, "seq": "AAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 97): 0)" ] }, { "qname": "test_genome-hap210927", "source_contig": "test_genome", "source_pos": 100150, "mapq": 60, "seq": "AATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 132): 0)" ] }, { "qname": "test_genome-hap210927", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGACACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 4): 1)" ] }, { "qname": "test_genome-hap113751", "source_contig": "test_genome", "source_pos": 99930, "mapq": 60, "seq": "TACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCATGCGCAAATACCTAGTCCTGGGGACGCA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -70): 38)" ] }, { "qname": "test_genome-hap113751", "source_contig": "test_genome", "source_pos": 100209, "mapq": 60, "seq": "TAGAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 191): 3)" ] }, { "qname": "test_genome-hap29011", "source_contig": "test_genome", "source_pos": 100003, "mapq": 60, "seq": "ATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, -15): 0)" ] }, { "qname": "test_genome-hap29011", "source_contig": "test_genome", "source_pos": 100365, "mapq": 60, "seq": "GGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCCCTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 347): 2)" ] }, { "qname": "test_genome-hap29559", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTATATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 2): 1)" ] }, { "qname": "test_genome-hap29559", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "AGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 0)", "(WithinRepeat(Forward, 1): 0)" ] }, { "qname": "test_genome-hap19991", "source_contig": "test_genome", "source_pos": 100346, "mapq": 60, "seq": "CTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 328): 0)" ] }, { "qname": "test_genome-hap19991", "source_contig": "test_genome", "source_pos": 100049, "mapq": 60, "seq": "GCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTGCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 31): 1)" ] }, { "qname": "test_genome-hap114229", "source_contig": "test_genome", "source_pos": 100204, "mapq": 60, "seq": "AGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 186): 0)" ] }, { "qname": "test_genome-hap114229", "source_contig": "test_genome", "source_pos": 100529, "mapq": 60, "seq": "GGCAGCCGGATCTCATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACTGTGTCTGAAGCGTCGCAAGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 511): 1)" ] }, { "qname": "test_genome-hap15567", "source_contig": "test_genome", "source_pos": 99536, "mapq": 60, "seq": "TCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -464): 0)" ] }, { "qname": "test_genome-hap15567", "source_contig": "test_genome", "source_pos": 99769, "mapq": 60, "seq": "TGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -231): 0)" ] }, { "qname": "test_genome-hap219305", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Forward, 4): 0)" ] }, { "qname": "test_genome-hap219305", "source_contig": "test_genome", "source_pos": 100099, "mapq": 60, "seq": "AGGTGACTCAGGCTCCGGCCCACCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTGACCGACCACATTTTGCTGTTTTTTGGTCC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 81): 2)" ] }, { "qname": "test_genome-hap217163", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Forward, 0): 0)" ] }, { "qname": "test_genome-hap217163", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCGGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 0): 1)" ] }, { "qname": "test_genome-hap116781", "source_contig": "test_genome", "source_pos": 99621, "mapq": 60, "seq": "ACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -379): 0)" ] }, { "qname": "test_genome-hap116781", "source_contig": "test_genome", "source_pos": 99302, "mapq": 60, "seq": "AGAGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCCTATCGAGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -698): 3)" ] }, { "qname": "test_genome-hap21691", "source_contig": "test_genome", "source_pos": 99510, "mapq": 60, "seq": "CTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -490): 0)" ] }, { "qname": "test_genome-hap21691", "source_contig": "test_genome", "source_pos": 99751, "mapq": 60, "seq": "GTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -249): 0)" ] }, { "qname": "test_genome-hap12231", "source_contig": "test_genome", "source_pos": 99594, "mapq": 60, "seq": "ACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTGCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTTTATTTTCCGCAGCAAATTTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -406): 1)" ] }, { "qname": "test_genome-hap12231", "source_contig": "test_genome", "source_pos": 99294, "mapq": 60, "seq": "GAGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -706): 1)" ] }, { "qname": "test_genome-hap2149", "source_contig": "test_genome", "source_pos": 100064, "mapq": 60, "seq": "TAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTTTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 46): 1)" ] }, { "qname": "test_genome-hap2149", "source_contig": "test_genome", "source_pos": 100333, "mapq": 60, "seq": "GTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTCGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 315): 1)" ] }, { "qname": "test_genome-hap29163", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "GTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, -149): 0)", "(WithinRepeat(Reverse, 1): 0)" ] }, { "qname": "test_genome-hap29163", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "GAAACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 2): 1)" ] }, { "qname": "test_genome-hap210127", "source_contig": "test_genome", "source_pos": 99654, "mapq": 60, "seq": "ATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -346): 0)" ] }, { "qname": "test_genome-hap210127", "source_contig": "test_genome", "source_pos": 99233, "mapq": 60, "seq": "AGGTGTACCGGCCCCTGGAGACGTTGAGAGCTATGCACCTGCGACGAACACAAGAGTCGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -767): 0)" ] }, { "qname": "test_genome-hap216251", "source_contig": "test_genome", "source_pos": 99734, "mapq": 60, "seq": "AAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCCTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -266): 1)" ] }, { "qname": "test_genome-hap216251", "source_contig": "test_genome", "source_pos": 99956, "mapq": 60, "seq": "TCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTATGCTGGCGTGTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -44): 0)" ] }, { "qname": "test_genome-hap1159", "source_contig": "test_genome", "source_pos": 99935, "mapq": 60, "seq": "CCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -65): 41)" ] }, { "qname": "test_genome-hap1159", "source_contig": "test_genome", "source_pos": 99636, "mapq": 60, "seq": "GCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -364): 0)" ] }, { "qname": "test_genome-hap112447", "source_contig": "test_genome", "source_pos": 99786, "mapq": 60, "seq": "TCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -214): 0)" ] }, { "qname": "test_genome-hap112447", "source_contig": "test_genome", "source_pos": 99535, "mapq": 60, "seq": "CTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -465): 0)" ] }, { "qname": "test_genome-hap13787", "source_contig": "test_genome", "source_pos": 100055, "mapq": 60, "seq": "GCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 37): 0)" ] }, { "qname": "test_genome-hap13787", "source_contig": "test_genome", "source_pos": 100364, "mapq": 60, "seq": "GCTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTCTATAGGACCTGGTTTCGACTGGTTCGGCGCTTA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 346): 2)" ] }, { "qname": "test_genome-hap211959", "source_contig": "test_genome", "source_pos": 99713, "mapq": 60, "seq": "CTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -287): 0)" ] }, { "qname": "test_genome-hap211959", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 2): 0)" ] }, { "qname": "test_genome-hap216659", "source_contig": "test_genome", "source_pos": 99570, "mapq": 60, "seq": "TGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTTTATTGTCCGCAGCAAATTTAGCTGGTCAATGGGCCACGGAACGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -430): 1)" ] }, { "qname": "test_genome-hap216659", "source_contig": "test_genome", "source_pos": 99338, "mapq": 60, "seq": "CAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTCATGAAGAAATGGATT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -662): 0)" ] }, { "qname": "test_genome-hap211917", "source_contig": "test_genome", "source_pos": 100437, "mapq": 60, "seq": "ACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 419): 0)" ] }, { "qname": "test_genome-hap211917", "source_contig": "test_genome", "source_pos": 100055, "mapq": 60, "seq": "GCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAATCGACTGAGATCA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 37): 1)" ] }, { "qname": "test_genome-hap115661", "source_contig": "test_genome", "source_pos": 99317, "mapq": 60, "seq": "TTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -683): 0)" ] }, { "qname": "test_genome-hap115661", "source_contig": "test_genome", "source_pos": 99625, "mapq": 60, "seq": "CAGGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCTGGAATACTCGCTAGTGGCCCCATGCCAAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -375): 2)" ] }, { "qname": "test_genome-hap114497", "source_contig": "test_genome", "source_pos": 100108, "mapq": 60, "seq": "CGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTTTGCTGTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 90): 0)" ] }, { "qname": "test_genome-hap114497", "source_contig": "test_genome", "source_pos": 99761, "mapq": 60, "seq": "GTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -239): 0)" ] }, { "qname": "test_genome-hap13791", "source_contig": "test_genome", "source_pos": 99677, "mapq": 60, "seq": "GTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -323): 0)" ] }, { "qname": "test_genome-hap13791", "source_contig": "test_genome", "source_pos": 99987, "mapq": 60, "seq": "ACAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTTGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTGGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGGCGCTATCTTCAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -31): 12)" ] }, { "qname": "test_genome-hap217905", "source_contig": "test_genome", "source_pos": 99549, "mapq": 60, "seq": "CACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGTGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -451): 1)" ] }, { "qname": "test_genome-hap217905", "source_contig": "test_genome", "source_pos": 99955, "mapq": 60, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTATGCTGGCGTGTTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -45): 0)" ] }, { "qname": "test_genome-hap24793", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "AGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 0)", "(WithinRepeat(Forward, 1): 0)" ] }, { "qname": "test_genome-hap24793", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "GCAATTAGAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACTTCCTTGACGTCCGCGCTATCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -25): 3)" ] }, { "qname": "test_genome-hap218649", "source_contig": "test_genome", "source_pos": 100458, "mapq": 60, "seq": "TAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 440): 0)" ] }, { "qname": "test_genome-hap218649", "source_contig": "test_genome", "source_pos": 100135, "mapq": 60, "seq": "CCAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 117): 1)" ] }, { "qname": "test_genome-hap218771", "source_contig": "test_genome", "source_pos": 100158, "mapq": 60, "seq": "TGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 140): 0)" ] }, { "qname": "test_genome-hap218771", "source_contig": "test_genome", "source_pos": 100513, "mapq": 60, "seq": "CTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 495): 0)" ] }, { "qname": "test_genome-hap214121", "source_contig": "test_genome", "source_pos": 100281, "mapq": 60, "seq": "CGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 263): 0)" ] }, { "qname": "test_genome-hap214121", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "AGATACAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGAGTATCGAGGCAAGCGCAAATACCTAGTGCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -23): 2)" ] }, { "qname": "test_genome-hap115913", "source_contig": "test_genome", "source_pos": 100206, "mapq": 60, "seq": "AAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGCAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 188): 1)" ] }, { "qname": "test_genome-hap115913", "source_contig": "test_genome", "source_pos": 99803, "mapq": 60, "seq": "TATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCGCGTGGTACTGATTATTCGGGCAAATCCA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -197): 1)" ] }, { "qname": "test_genome-hap23313", "source_contig": "test_genome", "source_pos": 100106, "mapq": 60, "seq": "GAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCCACCACATTTTGCTGTTTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 88): 1)" ] }, { "qname": "test_genome-hap23313", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "AGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -149): 0)", "(WithinRepeat(Forward, 1): 0)" ] }, { "qname": "test_genome-hap25125", "source_contig": "test_genome", "source_pos": 100031, "mapq": 60, "seq": "CGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 13): 0)" ] }, { "qname": "test_genome-hap25125", "source_contig": "test_genome", "source_pos": 100031, "mapq": 0, "seq": "ACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATAAAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 5): 1)" ] }, { "qname": "test_genome-hap2387", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 3): 0)" ] }, { "qname": "test_genome-hap2387", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "GATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 2): 0)" ] }, { "qname": "test_genome-hap29847", "source_contig": "test_genome", "source_pos": 99621, "mapq": 60, "seq": "AATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -379): 0)" ] }, { "qname": "test_genome-hap29847", "source_contig": "test_genome", "source_pos": 99809, "mapq": 60, "seq": "GTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -191): 0)" ] }, { "qname": "test_genome-hap29817", "source_contig": "test_genome", "source_pos": 99721, "mapq": 60, "seq": "AAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -279): 0)" ] }, { "qname": "test_genome-hap29817", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "GTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAACTGTATCTGTATCTGTACCTGTATCTGTATCTGTATCTGTATCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -149): 2)", "(WithinRepeat(Reverse, 1): 2)" ] }, { "qname": "test_genome-hap2379", "source_contig": "test_genome", "source_pos": 99784, "mapq": 60, "seq": "AGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -216): 0)" ] }, { "qname": "test_genome-hap2379", "source_contig": "test_genome", "source_pos": 99451, "mapq": 60, "seq": "GCCACCAAATAGAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGATGTTCCGTGGCCCATTGACCAGCTAAATTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -549): 1)" ] }, { "qname": "test_genome-hap27499", "source_contig": "test_genome", "source_pos": 99874, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCAGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 3): 1)" ] }, { "qname": "test_genome-hap27499", "source_contig": "test_genome", "source_pos": 99874, "mapq": 60, "seq": "CGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCTACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -126): 1)" ] }, { "qname": "test_genome-hap2573", "source_contig": "test_genome", "source_pos": 100031, "mapq": 60, "seq": "GGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 13): 1)" ] }, { "qname": "test_genome-hap2573", "source_contig": "test_genome", "source_pos": 100323, "mapq": 60, "seq": "CCGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGCACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 305): 2)" ] }, { "qname": "test_genome-hap112677", "source_contig": "test_genome", "source_pos": 100056, "mapq": 60, "seq": "CAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTTGACTGAGATCAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 38): 1)" ] }, { "qname": "test_genome-hap112677", "source_contig": "test_genome", "source_pos": 100347, "mapq": 60, "seq": "ACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 329): 1)" ] }, { "qname": "test_genome-hap212441", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "TATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 0): 0)" ] }, { "qname": "test_genome-hap212441", "source_contig": "test_genome", "source_pos": 99798, "mapq": 60, "seq": "TGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCACACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -202): 1)" ] }, { "qname": "test_genome-hap15343", "source_contig": "test_genome", "source_pos": 100131, "mapq": 60, "seq": "GCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 113): 0)" ] }, { "qname": "test_genome-hap15343", "source_contig": "test_genome", "source_pos": 99798, "mapq": 60, "seq": "TGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGGCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -202): 1)" ] }, { "qname": "test_genome-hap27603", "source_contig": "test_genome", "source_pos": 99463, "mapq": 60, "seq": "AATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -537): 0)" ] }, { "qname": "test_genome-hap27603", "source_contig": "test_genome", "source_pos": 99833, "mapq": 60, "seq": "CGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTTACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -167): 1)" ] }, { "qname": "test_genome-hap1233", "source_contig": "test_genome", "source_pos": 100152, "mapq": 60, "seq": "TCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 134): 0)" ] }, { "qname": "test_genome-hap1233", "source_contig": "test_genome", "source_pos": 99985, "mapq": 60, "seq": "TCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTAAGTTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -33): 13)" ] }, { "qname": "test_genome-hap216519", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 5): 0)" ] }, { "qname": "test_genome-hap216519", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 0): 0)" ] }, { "qname": "test_genome-hap28969", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 3): 0)" ] }, { "qname": "test_genome-hap28969", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "ATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 3): 0)" ] }, { "qname": "test_genome-hap213681", "source_contig": "test_genome", "source_pos": 99481, "mapq": 60, "seq": "ATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGATGCGGAAAATAAAGCATCAATCGTTGGC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -519): 1)" ] }, { "qname": "test_genome-hap213681", "source_contig": "test_genome", "source_pos": 99840, "mapq": 60, "seq": "CACGACCCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -160): 0)" ] }, { "qname": "test_genome-hap15927", "source_contig": "test_genome", "source_pos": 99739, "mapq": 60, "seq": "TTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCTTGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -261): 1)" ] }, { "qname": "test_genome-hap15927", "source_contig": "test_genome", "source_pos": 99959, "mapq": 60, "seq": "TTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGCCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGACGCTATCTTCGCGACCCGACTTGTGGGCTTATGCTGGCGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -59): 28)" ] }, { "qname": "test_genome-hap17441", "source_contig": "test_genome", "source_pos": 100282, "mapq": 60, "seq": "GTGTCCTACAATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTCGAAACCAGGTCCTATATAGGCCCCTACAGAATAAAGGGAGTACTCAGACGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 264): 0)" ] }, { "qname": "test_genome-hap17441", "source_contig": "test_genome", "source_pos": 100615, "mapq": 60, "seq": "GGAGATCTCTAAATGGAACCTAAGACTTTTCGGGCGGCAACAATACCTTCCATCGCCTACCCGTACCTGTGCATTGCTGATATGCTGGCAGCCGGATCTCATCTATCATGGCAGGCAGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 597): 5)" ] }, { "qname": "test_genome-hap1409", "source_contig": "test_genome", "source_pos": 100446, "mapq": 60, "seq": "AAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 428): 0)" ] }, { "qname": "test_genome-hap1409", "source_contig": "test_genome", "source_pos": 100153, "mapq": 60, "seq": "ATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTAGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 135): 1)" ] }, { "qname": "test_genome-hap217269", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 3): 0)" ] }, { "qname": "test_genome-hap217269", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 4): 0)" ] }, { "qname": "test_genome-hap16795", "source_contig": "test_genome", "source_pos": 100536, "mapq": 60, "seq": "TTATGCTGGCAGCCGGATCTCATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 518): 0)" ] }, { "qname": "test_genome-hap16795", "source_contig": "test_genome", "source_pos": 100274, "mapq": 60, "seq": "GGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTCGAAACCAGGTCCTATATAGGCCCCTACAGAATAAAGGGAATAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 256): 1)" ] }, { "qname": "test_genome-hap219703", "source_contig": "test_genome", "source_pos": 99644, "mapq": 60, "seq": "CGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -356): 0)" ] }, { "qname": "test_genome-hap219703", "source_contig": "test_genome", "source_pos": 99291, "mapq": 60, "seq": "ATGGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -712): 2)" ] }, { "qname": "test_genome-hap12415", "source_contig": "test_genome", "source_pos": 100590, "mapq": 60, "seq": "CTTTTCGGGCGGCGACAATACCTTCAATCGCCTACCCGTACCTGTGCATTGCTGTTATGCTGGCAGCCGGATCTCATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 572): 0)" ] }, { "qname": "test_genome-hap12415", "source_contig": "test_genome", "source_pos": 100308, "mapq": 60, "seq": "GGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTCGAAACCAGGTCCTATATAGGCCCCTACAGAATAAAGGGAGTACTCAGACGGTATGACCTGGCAGGACTTACTTAGGA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 290): 0)" ] }, { "qname": "test_genome-hap115623", "source_contig": "test_genome", "source_pos": 100138, "mapq": 60, "seq": "GGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 120): 0)" ] }, { "qname": "test_genome-hap115623", "source_contig": "test_genome", "source_pos": 99829, "mapq": 60, "seq": "CTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -171): 0)" ] }, { "qname": "test_genome-hap12439", "source_contig": "test_genome", "source_pos": 100026, "mapq": 60, "seq": "ATCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATTCTGTGTTTAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 8): 2)" ] }, { "qname": "test_genome-hap12439", "source_contig": "test_genome", "source_pos": 100355, "mapq": 60, "seq": "CTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGAACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 337): 1)" ] }, { "qname": "test_genome-hap216007", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 0): 0)" ] }, { "qname": "test_genome-hap216007", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -1): 0)" ] }, { "qname": "test_genome-hap214297", "source_contig": "test_genome", "source_pos": 100254, "mapq": 60, "seq": "CGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACTGCCCGCCGCGGTTTGAAGGCACGCGGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 236): 2)" ] }, { "qname": "test_genome-hap214297", "source_contig": "test_genome", "source_pos": 100000, "mapq": 18, "seq": "TACAGATACAGATACACATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACCGACGACGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -140): 2)" ] }, { "qname": "test_genome-hap219737", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CTCGGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTACCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, -145): 1)" ] }, { "qname": "test_genome-hap219737", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "CAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATAGAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATATAGATACAGATACAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 0): 2)" ] }, { "qname": "test_genome-hap116631", "source_contig": "test_genome", "source_pos": 99694, "mapq": 60, "seq": "TTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -306): 0)" ] }, { "qname": "test_genome-hap116631", "source_contig": "test_genome", "source_pos": 99405, "mapq": 60, "seq": "GTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCAACAAATACAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -595): 2)" ] }, { "qname": "test_genome-hap17853", "source_contig": "test_genome", "source_pos": 100292, "mapq": 60, "seq": "CCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 274): 0)" ] }, { "qname": "test_genome-hap17853", "source_contig": "test_genome", "source_pos": 99924, "mapq": 60, "seq": "TCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -76): 37)" ] }, { "qname": "test_genome-hap217071", "source_contig": "test_genome", "source_pos": 99653, "mapq": 60, "seq": "TATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -347): 0)" ] }, { "qname": "test_genome-hap217071", "source_contig": "test_genome", "source_pos": 99279, "mapq": 60, "seq": "AACACAAGAGTCGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -721): 0)" ] }, { "qname": "test_genome-hap210721", "source_contig": "test_genome", "source_pos": 99810, "mapq": 60, "seq": "ATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -190): 0)" ] }, { "qname": "test_genome-hap210721", "source_contig": "test_genome", "source_pos": 99810, "mapq": 0, "seq": "ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATTTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTTTCTGTATCCGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 5): 3)" ] }, { "qname": "test_genome-hap14627", "source_contig": "test_genome", "source_pos": 99776, "mapq": 60, "seq": "GAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTAAAGGATCAAGATATATCAAAAGCGTCCATGGGAGGTTGTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -224): 0)" ] }, { "qname": "test_genome-hap14627", "source_contig": "test_genome", "source_pos": 99429, "mapq": 60, "seq": "CTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTCATGAAGAAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -571): 0)" ] }, { "qname": "test_genome-hap28725", "source_contig": "test_genome", "source_pos": 99874, "mapq": 60, "seq": "CGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACAGATA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -126): 0)" ] }, { "qname": "test_genome-hap28725", "source_contig": "test_genome", "source_pos": 99874, "mapq": 0, "seq": "ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCCGTATCTGTATCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 5): 1)" ] }, { "qname": "test_genome-hap17165", "source_contig": "test_genome", "source_pos": 99761, "mapq": 60, "seq": "GTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGTTCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -239): 1)" ] }, { "qname": "test_genome-hap17165", "source_contig": "test_genome", "source_pos": 100161, "mapq": 60, "seq": "CCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 143): 0)" ] }, { "qname": "test_genome-hap26727", "source_contig": "test_genome", "source_pos": 99913, "mapq": 60, "seq": "ACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -87): 0)" ] }, { "qname": "test_genome-hap26727", "source_contig": "test_genome", "source_pos": 99913, "mapq": 0, "seq": "GTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTGTCTGTATCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -149): 1)", "(WithinRepeat(Reverse, 1): 1)" ] }, { "qname": "test_genome-hap215609", "source_contig": "test_genome", "source_pos": 100395, "mapq": 60, "seq": "CTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 377): 0)" ] }, { "qname": "test_genome-hap215609", "source_contig": "test_genome", "source_pos": 100108, "mapq": 60, "seq": "AACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 90): 0)" ] }, { "qname": "test_genome-hap218225", "source_contig": "test_genome", "source_pos": 99930, "mapq": 60, "seq": "TGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGACGCTATCTTCAAGACCCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGAATTGCCCGAATAATCAGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -70): 2)" ] }, { "qname": "test_genome-hap218225", "source_contig": "test_genome", "source_pos": 99746, "mapq": 60, "seq": "TTTAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATGCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCTAGTCAAACCAACCTA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -254): 4)" ] }, { "qname": "test_genome-hap119363", "source_contig": "test_genome", "source_pos": 99703, "mapq": 60, "seq": "ATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCATGTAACAACCTCCCATCGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -297): 1)" ] }, { "qname": "test_genome-hap119363", "source_contig": "test_genome", "source_pos": 99989, "mapq": 60, "seq": "TTAGAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGTCTTCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGACGCTATCTTC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -29): 7)" ] }, { "qname": "test_genome-hap119577", "source_contig": "test_genome", "source_pos": 99915, "mapq": 60, "seq": "TCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -85): 30)" ] }, { "qname": "test_genome-hap119577", "source_contig": "test_genome", "source_pos": 100186, "mapq": 60, "seq": "AATAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAAAACATAATCGTCAACTGATCTCAGTCGACTTAGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 168): 2)" ] }, { "qname": "test_genome-hap17407", "source_contig": "test_genome", "source_pos": 100425, "mapq": 60, "seq": "CTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAATAAGTCCTGCCAGGTCATACCGTCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 407): 1)" ] }, { "qname": "test_genome-hap17407", "source_contig": "test_genome", "source_pos": 100111, "mapq": 60, "seq": "AGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 93): 0)" ] }, { "qname": "test_genome-hap22849", "source_contig": "test_genome", "source_pos": 100259, "mapq": 60, "seq": "TGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCAC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 241): 0)" ] }, { "qname": "test_genome-hap22849", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "CAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGAAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAACACCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, -72): 2)" ] }, { "qname": "test_genome-hap28325", "source_contig": "test_genome", "source_pos": 99203, "mapq": 60, "seq": "CATCTACAGCAACCTACTTGTATACCAAGCAGGTGTACCGGCCCCTGGAGACGTTGAGAGCTATGCACCTGCGACGAACACAAGAGTCGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -797): 0)" ] }, { "qname": "test_genome-hap28325", "source_contig": "test_genome", "source_pos": 99561, "mapq": 60, "seq": "CTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTTTATTTTCCGCAGCAAATTTAGCTGGTCAATGGGCCACGGAACGTCAGTCCTAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -439): 0)" ] }, { "qname": "test_genome-hap114323", "source_contig": "test_genome", "source_pos": 100090, "mapq": 60, "seq": "AGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 72): 0)" ] }, { "qname": "test_genome-hap114323", "source_contig": "test_genome", "source_pos": 100394, "mapq": 60, "seq": "TGAAGCGTCGCATGGTGTGAATGTTCAATTGGTATTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 376): 2)" ] }, { "qname": "test_genome-hap24513", "source_contig": "test_genome", "source_pos": 99560, "mapq": 60, "seq": "CATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -440): 0)" ] }, { "qname": "test_genome-hap24513", "source_contig": "test_genome", "source_pos": 99828, "mapq": 60, "seq": "TGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGCCTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -172): 1)" ] }, { "qname": "test_genome-hap22261", "source_contig": "test_genome", "source_pos": 100100, "mapq": 60, "seq": "GACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 82): 0)" ] }, { "qname": "test_genome-hap22261", "source_contig": "test_genome", "source_pos": 100455, "mapq": 60, "seq": "AACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACATGAGGAGGATGGCGTCC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 437): 2)" ] }, { "qname": "test_genome-hap219763", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "ACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGAT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Forward, 5): 0)" ] }, { "qname": "test_genome-hap219763", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "GTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, -149): 0)", "(WithinRepeat(Reverse, 1): 0)" ] }, { "qname": "test_genome-hap18469", "source_contig": "test_genome", "source_pos": 100287, "mapq": 60, "seq": "GCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 269): 1)" ] }, { "qname": "test_genome-hap18469", "source_contig": "test_genome", "source_pos": 100082, "mapq": 60, "seq": "TGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 64): 0)" ] }, { "qname": "test_genome-hap14335", "source_contig": "test_genome", "source_pos": 99816, "mapq": 60, "seq": "CTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGGGGGTACATAATTTTGGGCATGCTAAAGGATCAGTCTCGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -184): 0)" ] }, { "qname": "test_genome-hap14335", "source_contig": "test_genome", "source_pos": 99479, "mapq": 60, "seq": "AAATGGATTCCGAGATACCAGCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCAATAGGACTCACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGATG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -521): 3)" ] }, { "qname": "test_genome-hap28533", "source_contig": "test_genome", "source_pos": 100039, "mapq": 60, "seq": "GTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, 21): 0)" ] }, { "qname": "test_genome-hap28533", "source_contig": "test_genome", "source_pos": 100344, "mapq": 60, "seq": "AAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAGGATAGGGCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 326): 0)" ] }, { "qname": "test_genome-hap27199", "source_contig": "test_genome", "source_pos": 99984, "mapq": 60, "seq": "GTCGTGAAGATAGCGTCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGCTACAGATACA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -16): 1)" ] }, { "qname": "test_genome-hap27199", "source_contig": "test_genome", "source_pos": 99984, "mapq": 0, "seq": "ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Reverse, 5): 0)" ] }, { "qname": "test_genome-hap2123", "source_contig": "test_genome", "source_pos": 99323, "mapq": 60, "seq": "AGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -677): 0)" ] }, { "qname": "test_genome-hap2123", "source_contig": "test_genome", "source_pos": 99657, "mapq": 60, "seq": "GATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -343): 0)" ] }, { "qname": "test_genome-hap13111", "source_contig": "test_genome", "source_pos": 99659, "mapq": 60, "seq": "AAGATATATCAAAAGCGTCCATGGGAGGTTGTTACATGACGTCACAACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTCTTCAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -341): 1)" ] }, { "qname": "test_genome-hap13111", "source_contig": "test_genome", "source_pos": 99333, "mapq": 60, "seq": "GTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCCGATTACGTTCGTGATATCCTACCGCATTATGTATGCTTACGCCACCAAATAGAATTGGCTTCATGAAGAAAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -667): 0)" ] }, { "qname": "test_genome-hap119525", "source_contig": "test_genome", "source_pos": 99499, "mapq": 60, "seq": "GCGACACTTCACTGAATGGATCACCGGGAATCTCATCTCATGGAGTCTCTCACTACTTCGCCATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -501): 0)" ] }, { "qname": "test_genome-hap119525", "source_contig": "test_genome", "source_pos": 99879, "mapq": 60, "seq": "GACGTCCTCGGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACATGGTCAGGTCAGTATGTTGGTTTGACTGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -121): 8)" ] }, { "qname": "test_genome-hap19251", "source_contig": "test_genome", "source_pos": 99778, "mapq": 60, "seq": "CAACCTCCCATGGACGCTTTTGATATATCTTGATCCTTTACGAGACTGATCCTTTAGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -222): 0)" ] }, { "qname": "test_genome-hap19251", "source_contig": "test_genome", "source_pos": 100092, "mapq": 60, "seq": "TCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTTTGCTGTTTTTTGGTCCTCAAGGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 74): 0)" ] }, { "qname": "test_genome-hap22223", "source_contig": "test_genome", "source_pos": 99567, "mapq": 60, "seq": "CCAGAACTCTACATGGCCAGAAAGAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTTTATTTTCCGCAGCAAATTTAGCTGGTCAATGGGCCACGGAACGTCAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -433): 0)" ] }, { "qname": "test_genome-hap22223", "source_contig": "test_genome", "source_pos": 99227, "mapq": 60, "seq": "CCAAGCAGGTGTACCGGCCCCTGGAGACGTTGAGAGCTATGCACCTGCGACGAACACAAGAGTCGGGGGGCCAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -773): 1)" ] }, { "qname": "test_genome-hap17933", "source_contig": "test_genome", "source_pos": 99988, "mapq": 60, "seq": "TGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGGCAAGCGCAAATACCTAGTCCTGGGGACGCAGATGGATCGAAGACCTTGAGGACCAAAAAACAGCAAAATGTGGTCGGTTACTTTTCTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Forward, -30): 8)" ] }, { "qname": "test_genome-hap17933", "source_contig": "test_genome", "source_pos": 100312, "mapq": 60, "seq": "GTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGATTCGGCGCTTAGATTTTTAAACGATAGGGCTTCATTGTAATTAAGGAAGATCGAGTAACGCAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Reverse, 294): 2)" ] }, { "qname": "test_genome-hap1635", "source_contig": "test_genome", "source_pos": 100353, "mapq": 60, "seq": "CAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTGGTTTCGACTGGTTCGGCGCTTAGATTTTTAAAG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 335): 0)" ] }, { "qname": "test_genome-hap1635", "source_contig": "test_genome", "source_pos": 100129, "mapq": 60, "seq": "ACTTTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 111): 0)" ] }, { "qname": "test_genome-hap116647", "source_contig": "test_genome", "source_pos": 100176, "mapq": 60, "seq": "ATCGAGTAACGCATCCCCTTATACTCAATCGTATTGTAGGACACAGCCCGCCGCGGTTTGAAGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 158): 0)" ] }, { "qname": "test_genome-hap116647", "source_contig": "test_genome", "source_pos": 99900, "mapq": 60, "seq": "CCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGATACCGAGGACGTCAAGGATGTTTGTGTATCGAGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -100): 21)" ] }, { "qname": "test_genome-hap16233", "source_contig": "test_genome", "source_pos": 99560, "mapq": 60, "seq": "CATAGGACTGACGTTCCGTGGCCCATTGACCAGCTAAATTTGCTGCGGAAAATAAAGCATCAATCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTGACACTCTTTCTGGCCATGTAGA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -440): 0)" ] }, { "qname": "test_genome-hap16233", "source_contig": "test_genome", "source_pos": 99834, "mapq": 60, "seq": "CCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATAATCAGTACCACGAGCAAGTGGAGTTTACGTGGTCAGGTCAGTATGTTGGTTTGACTGGGCGCGTGTAGCTTACGTAGACGTGGGTACATAATTTTCGGCATGC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -166): 2)" ] }, { "qname": "test_genome-hap112557", "source_contig": "test_genome", "source_pos": 100538, "mapq": 60, "seq": "TGTTATGCTGGCAGCCGGATCTCATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 520): 0)" ] }, { "qname": "test_genome-hap112557", "source_contig": "test_genome", "source_pos": 100292, "mapq": 60, "seq": "ATACGATTGAGTATAAGGGGATGCGTTACTCGATCTTCCTTAATTACAATGAAGCCCTATCCTTTAAAAATCTAAGCGCCGAACCAGTCGAAACCAGGTCCTATATAGGCCCCTACAGAATAAAGGGAGTACTCAGACGGTATGACCTGG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 274): 0)" ] }, { "qname": "test_genome-hap218683", "source_contig": "test_genome", "source_pos": 100000, "mapq": 60, "seq": "TCGATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTCCTCGGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, -78): 0)" ] }, { "qname": "test_genome-hap218683", "source_contig": "test_genome", "source_pos": 100000, "mapq": 0, "seq": "ATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGCTACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 3): 1)" ] }, { "qname": "test_genome-hap119721", "source_contig": "test_genome", "source_pos": 100516, "mapq": 60, "seq": "CATCTATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTAAACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 498): 0)" ] }, { "qname": "test_genome-hap119721", "source_contig": "test_genome", "source_pos": 100154, "mapq": 60, "seq": "TGCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 136): 1)" ] }, { "qname": "test_genome-hap29189", "source_contig": "test_genome", "source_pos": 99867, "mapq": 0, "seq": "TCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 4): 0)" ] }, { "qname": "test_genome-hap29189", "source_contig": "test_genome", "source_pos": 99867, "mapq": 60, "seq": "GGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCAAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCGGGTCGTGAAGATAGCGTCAGATACAGATACAGAT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -133): 1)" ] }, { "qname": "test_genome-hap119689", "source_contig": "test_genome", "source_pos": 100511, "mapq": 60, "seq": "ATCATGGCAGGCGGTCCCTCGATCCTTTGTCTTAGCCCGAAGCACTATGAAGCTAAAACGTCGGCAAATCGGTTACTTACACAGGTCTCGGACCTATACGTATAAACATACGGTGTCTGAAGCGTCGCAAGGTGTGAATGTTCAATTGGT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 493): 1)" ] }, { "qname": "test_genome-hap119689", "source_contig": "test_genome", "source_pos": 100189, "mapq": 60, "seq": "AAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGCCGGAGCCTGAGTCACCTGTTGTTCCACGTGCCTTCAAACCGCGGCGGGCTGTGTCCTACAATACGATTGAGTATAAGGGGACGCGTTACTCGATCTTCCTTAATTAC", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 171): 2)" ] }, { "qname": "test_genome-hap113643", "source_contig": "test_genome", "source_pos": 99261, "mapq": 60, "seq": "AGCTATGCACCTGCGACGAACACAAGAGTCGGGGGGCAAGGAGCGGGGAATCTGGATTAGAAAGGATGAGCCGTCGACAAACTGCGGGCTGCCTCCTACTGACTGGATCGTTGTAGAAAAACCGTCATGCTTTAACCGTATCGTGTACCC", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Forward, -739): 0)" ] }, { "qname": "test_genome-hap113643", "source_contig": "test_genome", "source_pos": 99614, "mapq": 60, "seq": "AACAGAACGGACCCTGAAACACCAATCCTTGGGCACAATCTTTGTGTCCAGAACTCTACATGGCCAGAAAAAGTGTCACCAAACCACTTGGTACTGCCTGTTCAGTCTCGGGAATACTCGCTAGTGGCCCCATGCCAACGATTGATGCTT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Reverse, -386): 1)" ] }, { "qname": "test_genome-hap112429", "source_contig": "test_genome", "source_pos": 99937, "mapq": 60, "seq": "ATCCATCTGCGTCCCCAGGACTAGGTATTTGCGCTTGCCTCGATACACAAACATCCTTGACGTACTCGGTATCTGTATCTGTATCTGACGCTATCTTCACGACCCGACTTGTGGGCTTATGCTGGCGTGTTTACTGGATTTGCCCGAATA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatStart(Reverse, -63): 42)" ] }, { "qname": "test_genome-hap112429", "source_contig": "test_genome", "source_pos": 99623, "mapq": 60, "seq": "TCGTTGGCATGGGGCCACTAGCGAGTATTCCCGAGACTGAACAGGCAGTACCAAGTGGTTTGGTTACACTCTTTCTGGCCATGTAGAGTTCTGGACACAAAGATTGTGCCCAAGGATTGGTGTTTCAGGGTCCGTTCTGTTGTGACGTCA", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -377): 1)" ] }, { "qname": "test_genome-hap110881", "source_contig": "test_genome", "source_pos": 100386, "mapq": 60, "seq": "CGCAAGGTGTGAATGTTCAATTGGTAGTAGTCTCAGTACACTAAGCTGCGTAAGTAGACCTACCTGAGGAGGATGTCGTCCTAAGTAAGTCCTGCCAGGTCATACCGTCTGAGTACTCCCTTTATTCTGTAGGGGCCTATATAGGACCTG", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 368): 0)" ] }, { "qname": "test_genome-hap110881", "source_contig": "test_genome", "source_pos": 100132, "mapq": 60, "seq": "TTTCTAATTGCTTCTATGTCCATTCTTGGGCATCCTGTGTTTACGACCGAAACAACTAAGTCGACTGAGATCAGTTGACGATTATGTTCTACTGATGGGACGGAGCCTGAGTCACCTGTTGTTCCGCGTGCCTTCAAACCGCGGCGGGCT", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatEnd(Forward, 114): 1)" ] }, { "qname": "test_genome-hap24569", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "TCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTA", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(WithinRepeat(Reverse, 4): 0)" ] }, { "qname": "test_genome-hap24569", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "ATACAGATACAGATACAGATACAGATAAAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATCCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(WithinRepeat(Forward, 3): 2)" ] }, { "qname": "test_genome-hap19111", "source_contig": "test_genome", "source_pos": 100115, "mapq": 60, "seq": "AGGCACGCGGAACAACAGGTGACTCAGGCTCCGGCCCATCAGTAGAACATAATCGTCAACTGATCTCAGTCGACTTAGTTGTTTCGGTCGTAAACACAGGATGCCCAAGAATGGACATAGAAGCAATTAGAAAAGTAACCGACCACATTT", "seq_len": 150, "is_first_in_template": true, "position_set": [ "(RelativeToRepeatEnd(Reverse, 97): 0)" ] }, { "qname": "test_genome-hap19111", "source_contig": "test_genome", "source_pos": 99833, "mapq": 60, "seq": "AGCATGCCCAAAATTATGTACCCCCGTCTACGTAAGCTACACGCGCCCAGTCAAACCAACATACTGACCTGACCACGTAAACTCCACTTGCTCGTGGTACTGATTATTCGGGCGAATCCAGTAAACACGCCAGCATAAGCCCACAAGTCG", "seq_len": 150, "is_first_in_template": false, "position_set": [ "(RelativeToRepeatStart(Forward, -167): 1)" ] }, { "qname": "test_genome-hap22105", "source_contig": "*", "source_pos": -1, "mapq": 0, "seq": "AGATAGCGTCAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAGATACAG", "seq_len": 150, "is_first_in_template": 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