# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "segul"
version = "0.22.1"
authors = ["Heru Handika <herubiolog@gmail.com>"]
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "An ultrafast and memory-efficient tool for phylogenomics"
homepage = "https://www.segul.app/"
readme = "README.md"
keywords = [
    "cli",
    "utility",
    "alignment",
    "genomics",
    "phylogenomics",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/hhandika/segul"

[profile.release]
lto = "fat"
debug = 0
panic = "abort"

[lib]
name = "segul"
path = "src/lib.rs"

[[bin]]
name = "segul"
path = "src/main.rs"

[[test]]
name = "cli"
path = "tests/cli.rs"

[[test]]
name = "concat"
path = "tests/concat.rs"

[[test]]
name = "convert"
path = "tests/convert.rs"

[[test]]
name = "extract"
path = "tests/extract.rs"

[[test]]
name = "filter"
path = "tests/filter.rs"

[[test]]
name = "id"
path = "tests/id.rs"

[[test]]
name = "partition"
path = "tests/partition.rs"

[[test]]
name = "read"
path = "tests/read.rs"

[[test]]
name = "remove"
path = "tests/remove.rs"

[[test]]
name = "rename"
path = "tests/rename.rs"

[[test]]
name = "seq_filter"
path = "tests/seq_filter.rs"

[[test]]
name = "split"
path = "tests/split.rs"

[[test]]
name = "summary"
path = "tests/summary.rs"

[[test]]
name = "translate"
path = "tests/translate.rs"

[[test]]
name = "utils"
path = "tests/utils.rs"

[dependencies.ahash]
version = "0.8.*"

[dependencies.alphanumeric-sort]
version = "1.4.*"

[dependencies.anyhow]
version = "1.0.*"

[dependencies.assert_approx_eq]
version = "1.1.0"

[dependencies.bytecount]
version = "0.6.*"

[dependencies.chrono]
version = "0.4.*"

[dependencies.clap]
version = "4.1.1"
features = [
    "cargo",
    "derive",
]

[dependencies.colored]
version = "2.0.0"

[dependencies.dialoguer]
version = "0.*"

[dependencies.flate2]
version = "1.0.25"

[dependencies.glob]
version = "0.3.*"

[dependencies.indexmap]
version = "2.*"

[dependencies.indicatif]
version = "0.17.*"

[dependencies.lazy_static]
version = "1.*"

[dependencies.log]
version = "0.*"

[dependencies.log4rs]
version = "1.*"

[dependencies.nom]
version = "7.*"

[dependencies.noodles]
version = "0.31.1"
features = [
    "fastq",
    "fasta",
]

[dependencies.num-format]
version = "0.*"

[dependencies.rayon]
version = "1.*"

[dependencies.regex]
version = "1.*"

[dependencies.serde]
version = "1.0.152"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.91"

[dependencies.walkdir]
version = "2.3.3"

[dependencies.zip]
version = "0.6.6"

[dev-dependencies.assert_cmd]
version = "2.*"

[dev-dependencies.predicates]
version = "2.*"

[dev-dependencies.tempdir]
version = "0.3.7"

[lints.rust.unexpected_cfgs]
level = "warn"
priority = 0
check-cfg = ["cfg(tarpaulin_include)"]