# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "simpleaf"
version = "0.17.1"
authors = [
    "Rob Patro <rob@cs.umd.edu>",
    "Dongze He <dhe17@umd.edu>",
]
include = [
    "/src/*.rs",
    "/src/utils/*.rs",
    "/src/simpleaf_commands/*.rs",
    "/Cargo.toml",
    "/Cargo.lock",
    "/README.md",
    "/LICENSE",
]
description = "A rust framework to make using alevin-fry even simpler."
homepage = "https://github.com/COMBINE-lab/simpleaf"
readme = "README.md"
keywords = [
    "single-cell",
    "preprocessing",
    "RNA-seq",
    "single-nucleus",
    "RNA-velocity",
]
categories = [
    "command-line-utilities",
    "science",
]
license-file = "LICENSE"
repository = "https://github.com/COMBINE-lab/simpleaf"

[profile.dist]
lto = "thin"
inherits = "release"

[profile.release]
opt-level = 3
lto = "thin"

[dependencies.anyhow]
version = "^1.0"

[dependencies.chrono]
version = "0.4.38"

[dependencies.clap]
version = "4.5.8"
features = [
    "derive",
    "cargo",
    "deprecated",
    "wrap_help",
    "help",
    "usage",
    "error-context",
]

[dependencies.cmd_lib]
version = "^1.9.4"

[dependencies.csv]
version = "1.3.0"

[dependencies.jrsonnet-cli]
version = "0.5.0-pre95"

[dependencies.jrsonnet-evaluator]
version = "0.5.0-pre95"

[dependencies.jrsonnet-parser]
version = "0.5.0-pre95"

[dependencies.minreq]
version = "2.11.2"
features = [
    "serde",
    "serde_json",
    "https",
    "json-using-serde",
]

[dependencies.phf]
version = "0.11.2"
features = ["macros"]

[dependencies.roers]
version = "0.3.0"

[dependencies.semver]
version = "^1.0.23"

[dependencies.seq_geom_parser]
version = "0.3.0"

[dependencies.seq_geom_xform]
version = "0.4.0"

[dependencies.serde]
version = "1.0.203"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.119"

[dependencies.strum]
version = "0.26.3"
features = [
    "derive",
    "phf",
]

[dependencies.strum_macros]
version = "0.26.4"

[dependencies.tabled]
version = "0.15.0"

[dependencies.thiserror]
version = "1.0"

[dependencies.time]
version = "^0.3.36"
features = [
    "macros",
    "formatting",
    "parsing",
    "serde",
    "serde-human-readable",
]

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-subscriber]
version = "0.3.18"
features = ["env-filter"]
default-features = true

[dependencies.which]
version = "^6.0.1"