# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "single_rust"
version = "0.1.0-alpha.3"
build = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Single-cell analysis in Rust"
readme = "README.md"
categories = ["science"]
license-file = "LICENSE.md"
repository = "https://github.com/SingleRust/SingleRust"

[lib]
name = "single_rust"
path = "src/lib.rs"

[[test]]
name = "test_basic_load"
path = "tests/test_basic_load.rs"

[[test]]
name = "test_basic_stats"
path = "tests/test_basic_stats.rs"

[dependencies.anndata]
version = "0.4.2"

[dependencies.anndata-hdf5]
version = "0.3.0"

[dependencies.anndata-memory]
version = "0.1.1-alpha.1"

[dependencies.anyhow]
version = "1.0.86"

[dependencies.console]
version = "0.15.8"

[dependencies.flate2]
version = "1.0.28"

[dependencies.indicatif]
version = "0.17.8"

[dependencies.itertools]
version = "0.13.0"

[dependencies.log]
version = "0.4.22"

[dependencies.nalgebra]
version = "0.33.0"
features = [
    "serde-serialize",
    "rayon",
]

[dependencies.nalgebra-sparse]
version = "0.9.0"

[dependencies.ndarray]
version = "0.15.6"
features = ["rayon"]

[dependencies.ndarray-stats]
version = "0.5.1"

[dependencies.noisy_float]
version = "0.2.0"

[dependencies.nshare]
version = "0.9.0"
features = [
    "ndarray",
    "nalgebra",
]

[dependencies.num-traits]
version = "0.2.19"

[dependencies.permutation]
version = "0.4"

[dependencies.plotters]
version = "0.3.6"

[dependencies.polars]
version = "0.40"
features = [
    "lazy",
    "decompress-fast",
    "ndarray",
    "dtype-full",
]

[dependencies.rand]
version = "0.8.5"

[dependencies.rayon]
version = "1.9.0"

[dependencies.single_algebra]
version = "0.1.0-alpha.3"

[dependencies.smallvec]
version = "1.11"

[dependencies.smartcore]
version = "0.3.2"
features = ["ndarray-bindings"]

[dependencies.statrs]
version = "0.17.1"

[dev-dependencies.env_logger]
version = "0.11.5"

[features]
faer = ["single_algebra/faer"]
lapack = ["single_algebra/lapack"]