# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "ska"
version = "0.3.11"
authors = [
    "John Lees <jlees@ebi.ac.uk>",
    "Simon Harris <simon.harris@gatesfoundation.org>",
    "Johanna von Wachsmann <wachsmannj@ebi.ac.uk>",
    "Tommi Maklin <tommi.maklin@helsinki.fi>",
    "Joel Hellewell <joel@ebi.ac.uk>",
    "Timothy Russell <timothy.russell@lshtm.ac.uk>",
    "Romain Derelle <r.derelle@imperial.ac.uk>",
    "Nicholas Croucher <n.croucher@imperial.ac.uk>",
]
build = false
include = [
    "/Cargo.toml",
    "/LICENSE",
    "/NOTICE",
    "/src",
    "/tests",
]
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Split k-mer analysis"
homepage = "https://bacpop.org/software/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "sequencing",
    "k-mer",
    "alignment",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "Apache-2.0"
repository = "https://github.com/bacpop/ska.rust/"

[lib]
name = "ska"
path = "src/lib.rs"

[[bin]]
name = "ska"
path = "src/main.rs"

[[test]]
name = "align"
path = "tests/align.rs"

[[test]]
name = "distance"
path = "tests/distance.rs"

[[test]]
name = "fasta_input"
path = "tests/fasta_input.rs"

[[test]]
name = "fastq_input"
path = "tests/fastq_input.rs"

[[test]]
name = "map"
path = "tests/map.rs"

[[test]]
name = "skf_ops"
path = "tests/skf_ops.rs"

[dependencies.ahash]
version = ">=0.8.7"

[dependencies.argmin]
version = "0.9"
features = ["slog-logger"]

[dependencies.argmin-math]
version = "0.3"

[dependencies.ciborium]
version = "0.2"

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.hashbrown]
version = "0.14"

[dependencies.indicatif]
version = "0.17"
features = ["rayon"]

[dependencies.libm]
version = "0.2"

[dependencies.log]
version = "0.4"

[dependencies.ndarray]
version = "0.15"
features = [
    "serde",
    "rayon",
]

[dependencies.needletail]
version = "0.5.1"
features = ["compression"]

[dependencies.noodles-vcf]
version = "0.49"

[dependencies.num-traits]
version = "0.2"

[dependencies.num_cpus]
version = "1.0"

[dependencies.rayon]
version = "1.8"

[dependencies.regex]
version = "1.10"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.simple_logger]
version = "4"
features = ["stderr"]

[dependencies.snap]
version = "1.1"

[dev-dependencies.assert_fs]
version = "1.0.10"

[dev-dependencies.predicates]
version = "2.1.5"

[dev-dependencies.pretty_assertions]
version = "1.3.0"

[dev-dependencies.snapbox]
version = "0.4.3"