# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "skani"
version = "0.1.1"
exclude = [
    "test_files/*",
    "videos/*",
]
description = "skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assembled genomes (MAGs). It is extremely fast and is robust against incompleteness and fragmentation, giving accurate ANI estimates."
homepage = "https://github.com/bluenote-1577/skani"
documentation = "https://github.com/bluenote-1577/skani"
readme = "README.md"
license = "MIT OR Apache-2.0"
repository = "https://github.com/bluenote-1577/skani"

[profile.dev]
opt-level = 3

[profile.release]
panic = "abort"

[[bin]]
name = "skani"
path = "src/main.rs"
required-features = ["cli"]

[dependencies.bincode]
version = "1"

[dependencies.bio]
version = "1"

[dependencies.clap]
version = "3"
optional = true

[dependencies.fastrand]
version = "1"

[dependencies.fxhash]
version = "0"

[dependencies.gbdt]
version = "0"

[dependencies.gcollections]
version = "1"

[dependencies.intervallum]
version = "1"

[dependencies.log]
version = "0.4"

[dependencies.needletail]
version = "0.4"

[dependencies.num-traits]
version = "0"

[dependencies.partitions]
version = "0"

[dependencies.rand]
version = "0.8.3"

[dependencies.rayon]
version = "1.5"

[dependencies.rust-lapper]
version = "1"

[dependencies.serde]
version = "1"

[dependencies.serde_json]
version = "1"

[dependencies.simple-logging]
version = "2"

[dependencies.smallvec]
version = "1"
features = [
    "union",
    "serde",
    "write",
]

[dependencies.statrs]
version = "0"

[dependencies.thiserror]
version = "1.0"

[dev-dependencies.assert_cmd]
version = "1.0.1"

[dev-dependencies.predicates]
version = "1"

[dev-dependencies.serial_test]
version = "0"

[features]
cli = ["clap"]
default = ["cli"]

[target."cfg(target_env = \"musl\")".dependencies.tikv-jemallocator]
version = "0"