// an example programme that uses slow5lib to obtain auxiliary field of enum type from a slow5/blow5 file #include #include #include #define FILE_PATH "examples/adv/example3.blow5" #include #include #include int main(){ slow5_file_t *sp = slow5_open(FILE_PATH,"r"); if(sp==NULL){ fprintf(stderr,"Error in opening file\n"); exit(EXIT_FAILURE); } slow5_rec_t *rec = NULL; int ret=0; ret = slow5_get_next(&rec,sp); if(ret<0){ fprintf(stderr,"Error in slow5_get_next. Error code %d\n",ret); exit(EXIT_FAILURE); } uint8_t num_label = 0; char **labels = slow5_get_aux_enum_labels(sp->header, "end_reason", &num_label); if(labels==NULL){ fprintf(stderr,"Error in getting list of enum labels\n"); exit(EXIT_FAILURE); } uint8_t end_reason = slow5_aux_get_enum(rec,"end_reason",&ret); if(ret!=0){ fprintf(stderr,"Error in getting auxiliary attribute from the file. Error code %d\n",ret); exit(EXIT_FAILURE); } if(end_reason != SLOW5_ENUM_NULL){ printf("end_reason = %s\n", labels[end_reason]); } else{ printf("end_reason is missing for the record\n"); } slow5_rec_free(rec); slow5_close(sp); return 0; }