# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
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# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
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# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "splici"
version = "0.1.1"
description = "A tool to generate spliced and unspliced reference transcripts for sequence alignment"
readme = "README.md"
keywords = [
    "genomics",
    "bioinformatics",
    "splicing",
    "single-cell",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/noamteyssier/splici"

[profile.release]
lto = true

[dependencies.anyhow]
version = "1.0.72"

[dependencies.bedrs]
version = "0.1.10"

[dependencies.clap]
version = "4.3.19"
features = ["derive"]

[dependencies.faiquery]
version = "0.1.1"

[dependencies.fern]
version = "0.6.2"

[dependencies.flate2]
version = "1.0.26"

[dependencies.gtftools]
version = "0.1.9"

[dependencies.gzp]
version = "0.11.3"
features = ["deflate_rust"]
default-features = false

[dependencies.hashbrown]
version = "0.14.0"

[dependencies.humantime]
version = "2.1.0"

[dependencies.log]
version = "0.4.19"

[dependencies.noodles]
version = "0.46.0"
features = [
    "bgzf",
    "fasta",
    "core",
]