[package]
name = "splici"
version = "0.1.1"
edition = "2021"
description = "A tool to generate spliced and unspliced reference transcripts for sequence alignment"
license = "MIT"
repository = "https://github.com/noamteyssier/splici"
categories = [ "science", "command-line-utilities" ]
keywords = [ "genomics", "bioinformatics", "splicing", "single-cell" ]

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
anyhow = "1.0.72"
bedrs = "0.1.10"
clap = { version = "4.3.19", features = ["derive"] }
faiquery = "0.1.1"
fern = "0.6.2"
flate2 = "1.0.26"
gtftools = "0.1.9"
gzp = { version="0.11.3", features=["deflate_rust"], default-features = false }
hashbrown = "0.14.0"
humantime = "2.1.0"
log = "0.4.19"
noodles = { version = "0.46.0", features = ["bgzf", "fasta", "core"] }

[profile.release]
lto = true