chr1 test transcript 1 100 . + . transcript_id=A; test_case=Same transcript, 2 samples; tuni_id=tuni_0; chr1 test exon 70 90 . + . transcript_id=A; test_case=Same transcript, 2 samples; tuni_id=tuni_0; chr1 test exon 90 100 . + . transcript_id=A; test_case=Same transcript, 2 samples; tuni_id=tuni_0; chr2 test transcript 201 300 . + . transcript_id=B; test_case=Different strand; tuni_id=tuni_1; chr2 test exon 201 300 . + . transcript_id=B; test_case=Different strand; tuni_id=tuni_1; chr3 test gene 1 100 . + . gene_id=C; test_case=Gene records are unchanged; chr3 test transcript 1 110 . + . transcript_id=C; test_case=Different UTR, same CDS; tuni_id=tuni_4; chr3 test exon 1 50 . + . transcript_id=C; test_case=Different UTR, same CDS; tuni_id=tuni_4; chr3 test exon 70 110 . + . transcript_id=C; test_case=Different UTR, same CDS; tuni_id=tuni_4; chr3 test CDS 40 50 . + 0 transcript_id=C; test_case=Different UTR, same CDS; tuni_id=tuni_4; chr3 test CDS 90 100 . + 0 transcript_id=C; test_case=Different UTR, same CDS; tuni_id=tuni_4; chr4 test transcript 100 200 . + . transcript_id=E; test_case=Same UTR, different CDS; tuni_id=tuni_6; chr4 test exon 100 200 . + . transcript_id=E; test_case=Same UTR, different CDS; tuni_id=tuni_6; chr4 test CDS 120 180 . + . transcript_id=E; test_case=Same UTR, different CDS; tuni_id=tuni_6; chr1 test exon 1 50 . + . transcript_id=A; test_case=Same transcript, 2 samples (unordered exon); tuni_id=tuni_0;