chr1 test exon 1 2 . - . transcript_id "A"; gene_id "A"; chr1 test exon 11 12 . - . transcript_id "A"; gene_id "A"; chr2 test exon 20 30 . + . transcript_id "B"; gene_id "B"; chr2 test CDS 25 29 . + . transcript_id "B"; gene_id "B";