# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.70.0"
name = "varfish-server-worker"
version = "0.17.0"
authors = ["Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>"]
build = "build.rs"
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Rust-based worker for varfish-server"
readme = "README.md"
license = "MIT"
repository = "https://github.com/bihealth/varfish-server-worker"

[[bin]]
name = "varfish-server-worker"
path = "src/main.rs"

[dependencies.annonars]
version = "0.41"

[dependencies.anyhow]
version = "1.0"

[dependencies.async-compression]
version = "0.4"
features = [
    "tokio",
    "gzip",
]

[dependencies.aws-config]
version = "1.5"
features = ["behavior-version-latest"]

[dependencies.aws-sdk-s3]
version = "1.51"
features = ["behavior-version-latest"]

[dependencies.base16ct]
version = "0.2"

[dependencies.bio]
version = "2.0"

[dependencies.biocommons-bioutils]
version = "0.1"

[dependencies.byte-unit]
version = "5.0"

[dependencies.byteorder]
version = "1.5"
features = ["i128"]

[dependencies.bytesize]
version = "1.3"

[dependencies.chrono]
version = "0.4"
features = ["serde"]

[dependencies.clap]
version = "4.5"
features = [
    "derive",
    "help",
]

[dependencies.clap-verbosity-flag]
version = "2.2"

[dependencies.console]
version = "0.15"

[dependencies.csv]
version = "1.1"

[dependencies.derive-new]
version = "0.7.0"

[dependencies.derive_builder]
version = "0.20"
features = ["clippy"]

[dependencies.enum-map]
version = "2.7"
features = ["serde"]

[dependencies.ext-sort]
version = "0.1"
features = [
    "memory-limit",
    "bytesize",
]

[dependencies.fastrand]
version = "2.1"

[dependencies.flate2]
version = "1.0"

[dependencies.futures]
version = "0.3.30"

[dependencies.hgvs]
version = "0.17.3"

[dependencies.indexmap]
version = "2.6"
features = ["serde"]

[dependencies.itertools]
version = "0.13"

[dependencies.log]
version = "0.4"

[dependencies.mehari]
version = "0.29.6"

[dependencies.multimap]
version = "0.10"

[dependencies.noodles]
version = "0.77.0"
features = [
    "bgzf",
    "core",
    "csi",
    "tabix",
    "vcf",
    "bcf",
]

[dependencies.pbjson]
version = "0.7"

[dependencies.pbjson-types]
version = "0.7"

[dependencies.procfs]
version = "0.17"

[dependencies.prost]
version = "0.13.3"

[dependencies.rand]
version = "0.8"

[dependencies.rand_core]
version = "0.6"

[dependencies.rayon]
version = "1.10"

[dependencies.regex]
version = "1.11"

[dependencies.rocksdb]
version = "0.22"
features = ["multi-threaded-cf"]

[dependencies.rocksdb-utils-lookup]
version = "0.4"

[dependencies.serde]
version = "1.0"
features = ["serde_derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.serde_with]
version = "3.11"
features = ["indexmap_2"]

[dependencies.shellexpand]
version = "3.0"

[dependencies.strum]
version = "0.26"
features = ["derive"]

[dependencies.strum_macros]
version = "0.26"

[dependencies.tempfile]
version = "3.13.0"

[dependencies.thiserror]
version = "1.0"

[dependencies.thousands]
version = "0.2"

[dependencies.tokio]
version = "1.41"
features = ["full"]

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"

[dependencies.uuid]
version = "1.10"
features = [
    "v4",
    "fast-rng",
    "serde",
]

[dev-dependencies.async-std]
version = "1.13"
features = ["attributes"]

[dev-dependencies.file_diff]
version = "1.0"

[dev-dependencies.float-cmp]
version = "0.10"

[dev-dependencies.hxdmp]
version = "0.2.1"

[dev-dependencies.insta]
version = "1.41"
features = ["yaml"]

[dev-dependencies.pretty_assertions]
version = "1.4"

[dev-dependencies.rstest]
version = "0.23.0"

[dev-dependencies.serde_test]
version = "1.0"

[dev-dependencies.temp_testdir]
version = "0.2"

[dev-dependencies.tracing-test]
version = "0.2"

[build-dependencies.anyhow]
version = "1.0"

[build-dependencies.pbjson-build]
version = "0.7.0"

[build-dependencies.prost-build]
version = "0.13"