##fileformat=VCFv4.2
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths (counting only informative reads out of the total reads) for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=A,Type=Float,Description="Allele fractions for alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele">
##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Phred-scaled posterior probabilities for genotypes as defined in the VCF specification">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MB,Number=4,Type=Integer,Description="Per-sample component statistics to detect mate bias">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=PRI,Number=G,Type=Float,Description="Phred-scaled prior probabilities for genotypes">
##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias">
##FORMAT=<ID=SQ,Number=A,Type=Float,Description="Somatic quality">
##DRAGENCommandLine=<ID=HashTableBuild,Version="SW: 01.003.044.3.10.4, HashTableVersion: 8",CommandLineOptions="dragen --build-hash-table true --ht-reference /staging/human/reference/hs37d5/hs37d5.fa --output-dir /staging/human/reference/hs37d5/hs37d5.fa.k_21.f_16.m_149 --ht-num-threads 32 --ht-seed-len 21 --enable-cnv true">
##DRAGENCommandLine=<ID=dragen,Version="SW: 07.021.624.3.10.4, HW: 07.021.624",Date="Mon Mar 21 19:12:18 CET 2022",CommandLineOptions="--ref-dir /staging/human/reference/hs37d5/hs37d5.fa.k_21.f_16.m_149 --fastq-file1 /mnt/smb01-hum/NGSRawData/220318_A01077_0174_AH7JGVDMXY/Data/Intensities/BaseCalls/NA-12878WGS-Genom-size_S1_R1_001.fastq.gz --fastq-file2 /mnt/smb01-hum/NGSRawData/220318_A01077_0174_AH7JGVDMXY/Data/Intensities/BaseCalls/NA-12878WGS-Genom-size_S1_R2_001.fastq.gz --output-directory /staging/output/220318_A01077_0174_AH7JGVDMXY/NA-12878WGSWGS/ --output-file-prefix NA-12878WGSWGS_dragen --RGID WGS --RGSM NA-12878WGSWGS --num-threads 46 --enable-map-align true --enable-map-align-output true --enable-duplicate-marking true --enable-variant-caller true --qc-cross-cont-vcf /opt/edico/config/sample_cross_contamination_resource_GRCh37.vcf.gz --enable-cnv true --cnv-enable-self-normalization true --enable-sv true --qc-coverage-region-1 /staging/human/bed/CDS-v19-ROIs_v2.bed --qc-coverage-reports-1 cov_report full_res --qc-coverage-region-2 /staging/human/bed/Regions_Exomev8.bed --qc-coverage-reports-2 cov_report full_res --qc-coverage-region-3 /staging/human/bed/Padded_Exomev8.bed --qc-coverage-reports-3 cov_report full_res">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (informative and non-informative); some reads may have been filtered based on mapq etc.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=FractionInformativeReads,Number=1,Type=Float,Description="The fraction of informative reads out of the total reads">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
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#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
17	41244000	.	T	C	50.00	.	AC=1;AF=0.500;AN=2;DP=26;FS=6.648;MQ=250.00;MQRankSum=3.972;QD=1.92;ReadPosRankSum=2.306;SOR=0.517;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:8,18:0.692:26:3,10:5,8:43:85,0,41:5.0000e+01,2.1964e-04,4.3917e+01:0.00,34.77,37.77:6,2,8,10:5,3,6,12
17	41244435	.	T	C	50.00	.	AC=1;AF=0.500;AN=2;DP=26;FS=1.540;MQ=250.00;MQRankSum=4.295;QD=1.92;ReadPosRankSum=3.266;SOR=0.412;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,14:0.538:26:6,4:6,10:47:85,0,47:5.0000e+01,8.8200e-05,4.9868e+01:0.00,34.77,37.78:4,8,6,8:6,6,10,4
17	41244936	.	G	A	48.84	.	AC=1;AF=0.500;AN=2;DP=30;FS=1.484;MQ=250.00;MQRankSum=4.604;QD=1.63;ReadPosRankSum=1.841;SOR=0.368;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:17,13:0.433:30:9,9:8,4:47:84,0,50:4.8838e+01,7.8515e-05,5.3000e+01:0.00,34.77,37.77:11,6,7,6:7,10,7,6
17	41245237	.	A	G	46.47	.	AC=1;AF=0.500;AN=2;DP=29;FS=8.457;MQ=250.00;MQRankSum=4.427;QD=1.60;ReadPosRankSum=2.135;SOR=1.047;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:18,11:0.379:29:5,8:13,3:46:81,0,50:4.6469e+01,1.1970e-04,5.3000e+01:0.00,34.77,37.77:6,12,7,4:11,7,6,5
17	41245466	.	G	A	48.96	.	AC=1;AF=0.500;AN=2;DP=19;FS=7.425;MQ=250.00;MQRankSum=3.592;QD=2.58;ReadPosRankSum=2.849;SOR=0.895;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:6,3:5,5:48:84,0,50:4.8964e+01,7.6898e-05,5.3000e+01:0.00,34.77,37.77:8,3,3,5:5,6,4,4
17	41247122	.	A	ACCT	46.28	.	AC=1;AF=0.500;AN=2;DP=30;FS=1.571;MQ=250.00;MQRankSum=4.427;QD=1.54;ReadPosRankSum=-0.382;SOR=0.333;FractionInformativeReads=0.967	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:18,11:0.379:29:13,5:5,6:45:75,0,50:4.6283e+01,1.2397e-04,5.3000e+01:0.00,29.00,32.00:6,12,5,6:7,11,7,4
17	41247604	.	A	C	49.91	.	AC=1;AF=0.500;AN=2;DP=23;FS=0.000;MQ=245.42;MQRankSum=3.416;QD=2.17;ReadPosRankSum=-0.831;SOR=0.859;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,11:0.478:23:5,8:7,3:47:85,0,47:4.9907e+01,8.7803e-05,5.0000e+01:0.00,34.77,37.78:6,6,5,6:7,5,2,9
17	41248164	.	C	T	44.42	.	AC=1;AF=0.500;AN=2;DP=21;FS=0.000;MQ=213.09;MQRankSum=-2.648;QD=2.12;ReadPosRankSum=2.574;SOR=0.941;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,7:0.333:21:10,5:4,2:44:79,0,50:4.4419e+01,1.7876e-04,5.3000e+01:0.00,34.77,37.77:7,7,3,4:3,11,3,4
17	41248393	.	C	CAAAAAAAAAA	49.40	.	AC=1;AF=0.500;AN=2;DP=17;FS=0.000;MQ=235.18;MQRankSum=-0.529;QD=2.91;ReadPosRankSum=-0.212;SOR=0.814;FractionInformativeReads=0.941	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:9,7:0.438:16:5,7:4,0:48:55,0,50:4.9403e+01,7.1595e-05,5.3000e+01:0.00,6.00,9.00:4,5,4,3:2,7,4,3
17	41248484	.	G	C	49.57	.	AC=1;AF=0.500;AN=2;DP=20;FS=0.000;MQ=246.56;MQRankSum=2.051;QD=2.48;ReadPosRankSum=-0.532;SOR=0.787;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,9:0.450:20:6,8:5,1:48:84,0,50:4.9565e+01,6.9766e-05,5.3000e+01:0.00,34.77,37.77:4,7,3,6:5,6,4,5
17	41248588	.	CA	C	43.90	.	AC=1;AF=0.500;AN=2;DP=20;FS=0.000;MQ=249.95;MQRankSum=2.899;QD=2.20;ReadPosRankSum=-0.531;SOR=0.495;FractionInformativeReads=0.950	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:9,10:0.526:19:5,6:4,4:42:50,0,44:4.3903e+01,2.6733e-04,4.6810e+01:0.00,6.00,9.00:3,6,4,6:7,2,4,6
17	41249094	.	A	G	49.46	.	AC=1;AF=0.500;AN=2;DP=16;FS=0.000;MQ=250.00;MQRankSum=3.281;QD=3.09;ReadPosRankSum=2.540;SOR=0.836;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:9,7:0.438:16:6,5:3,2:48:84,0,50:4.9456e+01,7.0997e-05,5.3000e+01:0.00,34.77,37.77:3,6,2,5:4,5,4,3
17	41249363	.	TA	T	50.00	.	AC=1;AF=0.500;AN=2;DP=27;FS=0.000;MQ=250.00;MQRankSum=4.215;QD=1.85;ReadPosRankSum=-0.517;SOR=0.551;FractionInformativeReads=0.926	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,13:0.520:25:6,9:6,4:48:75,0,50:5.0000e+01,6.5634e-05,5.2913e+01:0.00,25.00,28.00:7,5,7,6:5,7,5,8
17	41250047	.	C	CT	17.50	.	AC=1;AF=0.500;AN=2;DP=23;FS=0.000;MQ=246.77;MQRankSum=3.566;QD=0.76;ReadPosRankSum=0.792;SOR=0.787;FractionInformativeReads=0.870	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:13,7:0.350:20:9,1:4,6:18:24,0,50:1.7502e+01,7.7909e-02,5.3078e+01:0.00,7.00,10.00:7,6,4,3:11,2,4,3
17	41250678	.	C	CT	50.00	.	AC=1;AF=0.500;AN=2;DP=22;FS=0.000;MQ=250.00;MQRankSum=3.502;QD=2.27;ReadPosRankSum=-0.111;SOR=0.446;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:6,16:0.727:22:2,11:4,5:42:79,0,40:5.0000e+01,2.7332e-04,4.2763e+01:0.00,29.00,32.00:2,4,7,9:2,4,8,8
17	41250923	.	T	C	48.55	.	AC=1;AF=0.500;AN=2;DP=22;FS=4.200;MQ=215.51;MQRankSum=-1.536;QD=2.21;ReadPosRankSum=0.067;SOR=1.863;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:13,9:0.409:22:7,5:6,4:47:83,0,50:4.8551e+01,8.2395e-05,5.3000e+01:0.00,34.77,37.77:6,7,2,7:8,5,6,3
17	41251495	.	C	G	50.00	.	AC=1;AF=0.500;AN=2;DP=26;FS=0.000;MQ=244.58;MQRankSum=0.830;QD=1.92;ReadPosRankSum=2.284;SOR=0.586;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,15:0.577:26:5,5:6,10:48:85,0,49:5.0000e+01,7.3065e-05,5.1660e+01:0.00,34.77,37.77:4,7,6,9:6,5,8,7
17	41251646	.	T	A	48.97	.	AC=1;AF=0.500;AN=2;DP=19;FS=0.000;MQ=250.00;MQRankSum=3.592;QD=2.58;ReadPosRankSum=2.766;SOR=0.976;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:6,4:5,4:48:84,0,50:4.8967e+01,7.6857e-05,5.3000e+01:0.00,34.77,37.77:5,6,3,5:4,7,3,5
17	41252575	.	G	A	54.75	.	AC=2;AF=1.000;AN=2;DP=4;FS=0.000;MQ=248.67;QD=13.69;SOR=2.833;FractionInformativeReads=0.750	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	1|1:0,3:1.000:3:0,3:0,0:5:91,6,0:5.4747e+01,4.7465e+00,1.7733e+00:0.00,34.77,37.78:0,0,0,3:0,0,0,3:41252575
17	41252591	.	C	CAT	34.86	.	AC=2;AF=1.000;AN=2;DP=3;FS=0.000;MQ=248.01;QD=11.62;SOR=2.303;FractionInformativeReads=0.667	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	1|1:0,2:1.000:2:0,2:0,0:4:63,4,0:3.4859e+01,3.5093e+00,2.5654e+00:0.00,28.00,31.01:0,0,0,2:0,0,0,2:41252575
17	41254174	.	A	G	49.92	.	AC=1;AF=0.500;AN=2;DP=27;FS=0.000;MQ=214.81;MQRankSum=1.189;QD=1.85;ReadPosRankSum=0.024;SOR=0.593;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,13:0.481:27:7,6:7,7:48:85,0,50:4.9920e+01,6.6004e-05,5.3000e+01:0.00,34.77,37.77:5,9,5,8:6,8,6,7
17	41254374	.	C	CTTTTTTTT	50.00	.	AC=1;AF=0.500;AN=2;DP=16;FS=5.434;MQ=210.96;MQRankSum=-0.660;QD=3.13;ReadPosRankSum=-0.811;SOR=1.472;FractionInformativeReads=0.812	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:6,7:0.538:13:3,2:3,5:48:56,0,50:5.0000e+01,6.6039e-05,5.2835e+01:0.00,6.00,9.00:4,2,2,5:3,3,3,4
17	41254405	.	C	T	49.85	.	AC=1;AF=0.500;AN=2;DP=18;FS=5.880;MQ=194.63;MQRankSum=-1.867;QD=2.77;ReadPosRankSum=-1.200;SOR=0.082;FractionInformativeReads=0.778	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:5,9:0.643:14:2,4:3,5:43:85,0,41:4.9850e+01,2.2411e-04,4.3846e+01:0.00,34.77,37.77:0,5,3,6:3,2,6,3
17	41254486	.	T	G	50.00	.	AC=1;AF=0.500;AN=2;DP=24;FS=0.000;MQ=190.76;MQRankSum=-2.872;QD=2.08;ReadPosRankSum=2.033;SOR=0.446;FractionInformativeReads=0.958	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:8,15:0.652:23:2,8:6,7:46:85,0,45:5.0000e+01,1.0767e-04,4.8300e+01:0.00,34.77,37.77:3,5,7,8:5,3,8,7
17	41254965	.	C	CT	21.87	.	AC=1;AF=0.500;AN=2;DP=27;FS=6.897;MQ=250.00;MQRankSum=3.788;QD=0.81;ReadPosRankSum=-0.512;SOR=1.800;FractionInformativeReads=0.815	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,8:0.364:22:7,5:7,3:22:31,0,50:2.1869e+01,2.8358e-02,5.3028e+01:0.00,9.00,12.00:6,8,6,2:5,9,5,3
17	41255102	.	A	G	46.54	.	AC=1;AF=0.500;AN=2;DP=31;FS=8.915;MQ=250.00;MQRankSum=4.603;QD=1.50;ReadPosRankSum=2.656;SOR=2.494;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:19,12:0.387:31:11,3:8,9:46:81,0,50:4.6540e+01,1.1810e-04,5.3000e+01:0.00,34.77,37.77:10,9,10,2:8,11,3,9:41255102
17	41255111	.	A	T	46.54	.	AC=1;AF=0.500;AN=2;DP=31;FS=8.915;MQ=250.00;MQRankSum=4.603;QD=1.50;ReadPosRankSum=3.305;SOR=2.494;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:19,12:0.387:31:12,3:7,9:46:81,0,50:4.6540e+01,1.1809e-04,5.3000e+01:0.00,34.77,37.77:10,9,10,2:7,12,3,9:41255102
17	41256074	.	CA	C	44.34	.	AC=1;AF=0.500;AN=2;DP=18;FS=0.000;MQ=243.16;MQRankSum=3.266;QD=2.46;ReadPosRankSum=2.663;SOR=1.112;FractionInformativeReads=0.944	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:11,6:0.353:17:8,3:3,3:43:55,0,47:4.4342e+01,2.0325e-04,5.0000e+01:0.00,11.00,14.01:5,6,2,4:4,7,5,1:41256074
17	41256089	.	AAAAAAAAAGAAAAG	A	44.34	.	AC=1;AF=0.500;AN=2;DP=19;FS=1.808;MQ=243.52;MQRankSum=3.377;QD=2.33;ReadPosRankSum=2.412;SOR=1.140;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:13,6:0.316:19:8,3:5,3:43:59,0,47:4.4345e+01,2.0313e-04,5.0000e+01:0.00,15.00,18.01:6,7,2,4:5,8,5,1:41256074
17	41257134	.	T	C	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.550;MQ=250.00;MQRankSum=4.561;QD=1.72;ReadPosRankSum=0.982;SOR=1.123;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,15:0.517:29:4,10:10,5:48:85,0,50:5.0000e+01,6.5568e-05,5.2926e+01:0.00,34.77,37.77:9,5,11,4:5,9,6,9
17	41257458	.	A	C	50.00	.	AC=1;AF=0.500;AN=2;DP=26;FS=0.000;MQ=250.00;MQRankSum=4.256;QD=1.92;ReadPosRankSum=1.972;SOR=0.586;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,15:0.577:26:5,7:6,8:48:85,0,49:5.0000e+01,7.2281e-05,5.1776e+01:0.00,34.77,37.77:4,7,6,9:6,5,6,9
17	41258043	.	C	T	49.92	.	AC=1;AF=0.500;AN=2;DP=27;FS=1.510;MQ=245.17;MQRankSum=3.761;QD=1.85;ReadPosRankSum=2.499;SOR=0.648;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,13:0.481:27:10,4:4,9:48:85,0,50:4.9921e+01,6.5994e-05,5.3000e+01:0.00,34.77,37.77:6,8,7,6:10,4,8,5
17	41258135	.	T	TA	53.60	.	AC=2;AF=1.000;AN=2;DP=18;FS=2.688;MQ=245.55;MQRankSum=1.557;QD=2.98;ReadPosRankSum=-0.623;SOR=1.100;FractionInformativeReads=0.778	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	1/1:3,11:0.786:14:3,5:0,6:4:60,4,0:5.3602e+01,3.6018e+00,2.4898e+00:0.00,6.00,9.00:1,2,7,4:1,2,7,4
17	41259049	.	C	T	50.00	.	AC=1;AF=0.500;AN=2;DP=16;FS=0.000;MQ=243.62;MQRankSum=2.468;QD=3.13;ReadPosRankSum=-1.208;SOR=0.693;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:8,8:0.500:16:4,4:4,4:48:85,0,50:5.0000e+01,6.5195e-05,5.3000e+01:0.00,34.77,37.77:3,5,3,5:5,3,5,3
17	41259079	.	A	ATT	6.69	.	AC=1;AF=0.500;AN=2;DP=17;FS=0.000;MQ=201.18;MQRankSum=-1.944;QD=0.39;ReadPosRankSum=-0.254;SOR=0.765;FractionInformativeReads=0.765	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:10,3:0.231:13:7,0:3,3:7:11,0,50:6.6138e+00,1.0684e+00,5.4068e+01:0.00,5.00,8.00:4,6,1,2:5,5,2,1
17	41259113	.	G	A	49.21	.	AC=1;AF=0.500;AN=2;DP=20;FS=1.820;MQ=165.08;MQRankSum=-2.931;QD=2.46;ReadPosRankSum=-1.032;SOR=0.330;FractionInformativeReads=0.950	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:8,2:3,6:48:84,0,50:4.9209e+01,7.3869e-05,5.3000e+01:0.00,34.77,37.77:7,4,4,4:8,3,4,4
17	41260352	.	C	CA	43.45	.	AC=1;AF=0.500;AN=2;DP=24;FS=0.000;MQ=249.39;MQRankSum=2.684;QD=1.81;ReadPosRankSum=-0.206;SOR=0.551;FractionInformativeReads=0.792	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:6,5:5,3:43:52,0,50:4.3451e+01,2.1797e-04,5.3000e+01:0.00,9.00,12.00:6,5,4,4:5,6,5,3
17	41260723	.	C	CAAAAA	21.36	.	AC=1;AF=0.500;AN=2;DP=3;FS=0.000;MQ=180.17;MQRankSum=0.804;QD=7.12;ReadPosRankSum=0.804;SOR=0.693;FractionInformativeReads=0.667	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:1,1:0.500:2:1,1:0,0:20:26,0,25:2.1156e+01,4.0776e-02,2.7744e+01:0.00,5.00,8.00:1,0,1,0:1,0,1,0
17	41260808	.	A	G	32.31	.	AC=1;AF=0.500;AN=2;DP=16;FS=2.963;MQ=226.56;MQRankSum=-1.804;QD=2.02;ReadPosRankSum=-1.227;SOR=2.303;FractionInformativeReads=0.938	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,3:0.200:15:9,2:3,1:32:67,0,50:3.2315e+01,2.5712e-03,5.3003e+01:0.00,34.77,37.77:7,5,3,0:6,6,2,1
17	41261058	.	T	TCTATCTATCTACCTAC	50.00	.	AC=1;AF=0.500;AN=2;DP=22;FS=8.038;MQ=245.59;MQRankSum=1.671;QD=2.27;ReadPosRankSum=0.228;SOR=0.065;FractionInformativeReads=0.909	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:9,11:0.550:20:7,5:2,6:48:79,0,50:5.0000e+01,6.7276e-05,5.2604e+01:0.00,29.00,32.00:1,8,5,6:3,6,5,6
17	41261233	.	C	T	50.00	.	AC=1;AF=0.500;AN=2;DP=27;FS=3.473;MQ=249.57;MQRankSum=3.782;QD=1.85;ReadPosRankSum=1.586;SOR=0.957;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,15:0.556:27:5,7:7,8:48:85,0,49:5.0000e+01,6.8635e-05,5.2363e+01:0.00,34.77,37.77:5,7,9,6:8,4,7,8
17	41263044	.	A	G	50.00	.	AC=1;AF=0.500;AN=2;DP=17;FS=0.000;MQ=211.79;MQRankSum=-1.154;QD=2.94;ReadPosRankSum=1.027;SOR=0.283;FractionInformativeReads=0.824	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:7,7:0.500:14:3,4:4,3:48:85,0,50:5.0000e+01,6.5195e-05,5.3000e+01:0.00,34.77,37.77:6,1,5,2:2,5,4,3
17	41263117	.	C	CA	33.78	.	AC=1;AF=0.500;AN=2;DP=24;FS=0.000;MQ=241.08;MQRankSum=1.147;QD=1.41;ReadPosRankSum=0.899;SOR=0.569;FractionInformativeReads=0.958	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:13,10:0.435:23:6,6:7,4:34:41,0,50:3.3776e+01,1.8426e-03,5.3002e+01:0.00,7.00,10.00:6,7,5,5:7,6,5,5
17	41263566	.	T	C	48.97	.	AC=1;AF=0.500;AN=2;DP=19;FS=11.311;MQ=236.39;MQRankSum=0.041;QD=2.58;ReadPosRankSum=3.592;SOR=0.850;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:5,5:6,3:48:84,0,50:4.8967e+01,7.6857e-05,5.3000e+01:0.00,34.77,37.77:2,9,5,3:8,3,4,4
17	41264146	.	G	A	46.03	.	AC=1;AF=0.500;AN=2;DP=20;FS=1.922;MQ=249.51;MQRankSum=3.566;QD=2.30;ReadPosRankSum=2.060;SOR=0.697;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:13,7:0.350:20:9,5:4,2:45:81,0,50:4.6029e+01,1.3012e-04,5.3000e+01:0.00,34.77,37.77:8,5,3,4:6,7,5,2
17	41264364	.	A	G	50.00	.	AC=1;AF=0.500;AN=2;DP=24;FS=9.582;MQ=242.19;MQRankSum=1.439;QD=2.08;ReadPosRankSum=2.296;SOR=0.976;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:8,16:0.667:24:4,10:4,6:45:85,0,44:5.0000e+01,1.3668e-04,4.6681e+01:0.00,34.77,37.77:6,2,6,10:6,2,4,12
17	41264739	.	C	T	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=3.315;MQ=245.44;MQRankSum=2.728;QD=1.72;ReadPosRankSum=0.458;SOR=0.973;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,15:0.517:29:8,9:6,6:48:85,0,50:5.0000e+01,6.5568e-05,5.2926e+01:0.00,34.77,37.77:8,6,6,9:10,4,4,11:41264739
17	41264740	.	TGA	T	50.00	.	AC=1;AF=0.500;AN=2;DP=30;FS=1.455;MQ=245.59;MQRankSum=2.889;QD=1.67;ReadPosRankSum=0.104;SOR=0.774;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,16:0.533:30:8,10:6,6:48:79,0,50:5.0000e+01,6.6695e-05,5.2711e+01:0.00,29.00,32.00:8,6,7,9:10,4,5,11
17	41264743	.	CT	C	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.455;MQ=245.44;MQRankSum=2.728;QD=1.72;ReadPosRankSum=0.371;SOR=0.626;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,15:0.517:29:8,9:6,6:48:79,0,50:5.0000e+01,6.5414e-05,5.2957e+01:0.00,29.00,32.00:8,6,7,8:10,4,5,10:41264739
17	41264749	.	C	G	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=0.000;MQ=245.44;MQRankSum=2.728;QD=1.72;ReadPosRankSum=-0.022;SOR=0.818;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,15:0.517:29:8,9:6,6:48:85,0,50:5.0000e+01,6.5568e-05,5.2926e+01:0.00,34.77,37.77:7,7,7,8:9,5,5,10:41264739
17	41264750	.	A	T	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.455;MQ=245.44;MQRankSum=2.728;QD=1.72;ReadPosRankSum=-0.240;SOR=0.626;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,15:0.517:29:8,9:6,6:48:85,0,50:5.0000e+01,6.5723e-05,5.2896e+01:0.00,34.77,37.77:8,6,7,8:10,4,5,10:41264739
17	41264751	.	A	AGGG	50.00	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.455;MQ=245.44;MQRankSum=2.728;QD=1.72;ReadPosRankSum=-0.022;SOR=0.626;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,15:0.517:29:8,9:6,6:48:79,0,50:5.0000e+01,6.5567e-05,5.2927e+01:0.00,29.00,32.00:8,6,7,8:10,4,5,10:41264739
17	41264753	.	C	T	49.95	.	AC=1;AF=0.500;AN=2;DP=27;FS=0.000;MQ=245.10;MQRankSum=2.354;QD=1.85;ReadPosRankSum=0.655;SOR=0.836;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,13:0.481:27:8,7:6,6:48:85,0,50:4.9952e+01,6.5680e-05,5.3000e+01:0.00,34.77,37.77:7,7,7,6:9,5,5,8:41264739
17	41264755	.	TGAAAC	T	49.92	.	AC=1;AF=0.500;AN=2;DP=27;FS=0.000;MQ=245.10;MQRankSum=2.354;QD=1.85;ReadPosRankSum=0.898;SOR=0.836;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:14,13:0.481:27:8,7:6,6:48:79,0,50:4.9920e+01,6.6000e-05,5.3000e+01:0.00,29.00,32.00:7,7,7,6:9,5,5,8:41264739
17	41265776	.	A	G	44.93	.	AC=1;AF=0.500;AN=2;DP=37;FS=1.323;MQ=250.00;MQRankSum=5.026;QD=1.21;ReadPosRankSum=1.926;SOR=0.918;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:23,14:0.378:37:13,5:10,9:44:80,0,50:4.4928e+01,1.6140e-04,5.3000e+01:0.00,34.77,37.77:12,11,6,8:18,5,7,7
17	41266407	.	C	CT	32.74	.	AC=1;AF=0.500;AN=2;DP=20;FS=7.259;MQ=250.00;MQRankSum=3.510;QD=1.64;ReadPosRankSum=0.222;SOR=1.784;FractionInformativeReads=0.900	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:10,8:0.444:18:3,3:7,5:33:40,0,50:3.2743e+01,2.3317e-03,5.3002e+01:0.00,7.00,10.00:4,6,6,2:7,3,3,5
17	41267050	.	G	A	50.00	.	AC=1;AF=0.500;AN=2;DP=23;FS=0.000;MQ=250.00;MQRankSum=3.708;QD=2.17;ReadPosRankSum=0.902;SOR=0.948;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:7,16:0.696:23:2,8:5,8:44:85,0,42:5.0000e+01,1.7612e-04,4.5150e+01:0.00,34.77,37.77:4,3,10,6:3,4,8,8
17	41267518	.	CA	C	34.60	.	AC=1;AF=0.500;AN=2;DP=19;FS=0.000;MQ=249.03;MQRankSum=2.684;QD=1.82;ReadPosRankSum=1.528;SOR=0.551;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,8:0.421:19:5,7:6,1:35:43,0,50:3.4597e+01,1.5289e-03,5.3002e+01:0.00,8.00,11.00:6,5,4,4:2,9,3,5
17	41268206	.	A	C	47.63	.	AC=1;AF=0.500;AN=2;DP=22;FS=0.000;MQ=250.00;MQRankSum=3.873;QD=2.17;ReadPosRankSum=0.467;SOR=0.743;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:13,9:0.409:22:8,6:5,3:46:82,0,47:4.7633e+01,1.1833e-04,5.0000e+01:0.00,34.77,37.78:6,7,4,5:5,8,7,2:41268206
17	41268208	.	C	CT	47.63	.	AC=1;AF=0.500;AN=2;DP=23;FS=0.000;MQ=250.00;MQRankSum=3.873;QD=2.07;ReadPosRankSum=0.601;SOR=0.791;FractionInformativeReads=0.957	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB:PS	0|1:13,9:0.409:22:9,6:4,3:46:69,0,47:4.7633e+01,1.1833e-04,5.0000e+01:0.00,21.00,24.01:7,6,4,5:5,8,7,2:41268206
17	41270229	.	T	G	49.00	.	AC=1;AF=0.500;AN=2;DP=24;FS=0.000;MQ=116.11;MQRankSum=-0.572;QD=2.04;ReadPosRankSum=2.096;SOR=0.582;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:7,17:0.708:24:4,7:3,10:40:84,0,38:4.9000e+01,4.1689e-04,4.0788e+01:0.00,34.77,37.77:3,4,8,9:4,3,10,7
17	41270277	.	C	T	50.00	.	AC=1;AF=0.500;AN=2;DP=22;FS=1.792;MQ=139.69;MQRankSum=-0.334;QD=2.27;ReadPosRankSum=1.202;SOR=1.329;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:9,13:0.591:22:4,6:5,7:48:85,0,49:5.0000e+01,7.3842e-05,5.1547e+01:0.00,34.77,37.77:4,5,4,9:3,6,7,6
17	41270463	.	G	A	49.62	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.518;MQ=212.00;MQRankSum=1.474;QD=1.71;ReadPosRankSum=2.856;SOR=0.586;FractionInformativeReads=0.966	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:15,13:0.464:28:6,9:9,4:48:84,0,50:4.9621e+01,6.9157e-05,5.3000e+01:0.00,34.77,37.77:9,6,6,7:8,7,10,3
17	41270666	.	C	A	42.91	.	AC=1;AF=0.500;AN=2;DP=16;FS=0.000;MQ=226.92;MQRankSum=-0.457;QD=2.68;ReadPosRankSum=1.501;SOR=0.551;FractionInformativeReads=0.938	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,4:0.267:15:7,3:4,1:43:78,0,50:4.2913e+01,2.4386e-04,5.3000e+01:0.00,34.77,37.77:6,5,2,2:6,5,1,3
17	41270778	.	C	CT	14.05	.	AC=1;AF=0.500;AN=2;DP=19;FS=2.060;MQ=228.42;MQRankSum=0.793;QD=0.74;ReadPosRankSum=0.680;SOR=1.236;FractionInformativeReads=0.842	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,5:0.312:16:6,4:5,1:14:23,0,47:1.4053e+01,1.7430e-01,5.0174e+01:0.00,9.00,12.01:4,7,1,4:5,6,0,5
17	41271293	.	GA	G	50.00	.	AC=1;AF=0.500;AN=2;DP=21;FS=0.000;MQ=250.00;MQRankSum=3.742;QD=2.38;ReadPosRankSum=-0.265;SOR=0.693;FractionInformativeReads=0.952	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:10,10:0.500:20:5,2:5,8:48:60,0,50:5.0000e+01,6.5195e-05,5.3000e+01:0.00,10.00,13.00:4,6,4,6:9,1,4,6
17	41273095	.	G	A	48.18	.	AC=1;AF=0.500;AN=2;DP=20;FS=4.285;MQ=243.91;MQRankSum=2.739;QD=2.41;ReadPosRankSum=0.270;SOR=1.863;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:12,8:0.400:20:9,7:3,1:47:83,0,50:4.8185e+01,8.7728e-05,5.3000e+01:0.00,34.77,37.77:6,6,2,6:7,5,3,5
17	41273348	.	T	C	48.08	.	AC=1;AF=0.500;AN=2;DP=32;FS=3.352;MQ=212.50;MQRankSum=0.821;QD=1.50;ReadPosRankSum=-0.100;SOR=1.609;FractionInformativeReads=0.969	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:18,13:0.419:31:14,7:4,6:47:83,0,50:4.8079e+01,8.9364e-05,5.3000e+01:0.00,34.77,37.77:9,9,9,4:7,11,9,4
17	41273379	.	G	C	48.35	.	AC=1;AF=0.500;AN=2;DP=33;FS=5.093;MQ=232.68;MQRankSum=1.767;QD=1.47;ReadPosRankSum=2.932;SOR=1.609;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:19,14:0.424:33:13,6:6,8:47:83,0,50:4.8348e+01,8.5297e-05,5.3000e+01:0.00,34.77,37.77:10,9,10,4:8,11,8,6
17	41273537	.	A	C	50.00	.	AC=1;AF=0.500;AN=2;DP=33;FS=3.419;MQ=242.40;MQRankSum=1.184;QD=1.52;ReadPosRankSum=2.240;SOR=0.257;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,19:0.576:33:7,12:7,7:48:85,0,48:5.0000e+01,7.4433e-05,5.1464e+01:0.00,34.77,37.77:3,11,7,12:6,8,6,13
17	41274778	.	G	A	50.00	.	AC=1;AF=0.500;AN=2;DP=28;FS=0.000;MQ=249.53;MQRankSum=3.775;QD=1.79;ReadPosRankSum=1.604;SOR=0.765;FractionInformativeReads=0.964	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:11,16:0.593:27:6,11:5,5:48:85,0,48:5.0000e+01,7.5966e-05,5.1254e+01:0.00,34.77,37.77:5,6,7,9:6,5,8,8
17	41274906	.	G	A	49.15	.	AC=1;AF=0.500;AN=2;DP=27;FS=3.816;MQ=245.01;MQRankSum=1.029;QD=1.82;ReadPosRankSum=0.326;SOR=0.193;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:17,10:0.370:27:7,4:10,6:47:84,0,47:4.9145e+01,9.6306e-05,5.0000e+01:0.00,34.77,37.78:5,12,5,5:11,6,5,5
17	41275081	.	G	GA	50.00	.	AC=1;AF=0.500;AN=2;DP=23;FS=0.000;MQ=219.53;MQRankSum=-0.626;QD=2.17;ReadPosRankSum=0.165;SOR=1.022;FractionInformativeReads=0.957	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:10,12:0.545:22:4,5:6,7:47:67,0,47:5.0000e+01,9.1554e-05,4.9554e+01:0.00,17.00,20.01:5,5,7,5:3,7,6,6
17	41275151	.	G	C	49.62	.	AC=1;AF=0.500;AN=2;DP=29;FS=3.372;MQ=226.61;MQRankSum=2.902;QD=1.71;ReadPosRankSum=-0.461;SOR=1.426;FractionInformativeReads=0.966	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:15,13:0.464:28:6,8:9,5:48:84,0,50:4.9622e+01,6.9150e-05,5.3000e+01:0.00,34.77,37.77:7,8,4,9:10,5,7,6
17	41275366	.	GTTTTTTT	G	50.00	.	AC=1;AF=0.500;AN=2;DP=23;FS=4.123;MQ=243.51;MQRankSum=2.570;QD=2.17;ReadPosRankSum=-0.246;SOR=0.477;FractionInformativeReads=0.913	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:10,11:0.524:21:4,9:6,2:48:55,0,50:5.0000e+01,6.5768e-05,5.2887e+01:0.00,5.00,8.00:3,7,6,5:5,5,6,5
17	41275645	.	A	G	50.00	.	AC=1;AF=0.500;AN=2;DP=32;FS=1.406;MQ=237.21;MQRankSum=-1.397;QD=1.56;ReadPosRankSum=2.152;SOR=0.986;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:15,17:0.531:32:11,9:4,8:48:85,0,50:5.0000e+01,6.6587e-05,5.2731e+01:0.00,34.77,37.77:7,8,10,7:7,8,8,9
17	41276247	.	A	G	44.97	.	AC=1;AF=0.500;AN=2;DP=29;FS=1.562;MQ=250.00;MQRankSum=4.291;QD=1.55;ReadPosRankSum=1.990;SOR=0.368;FractionInformativeReads=0.966	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:18,10:0.357:28:9,6:9,4:44:80,0,50:4.4969e+01,1.6008e-04,5.3000e+01:0.00,34.77,37.77:11,7,5,5:12,6,5,5
17	41276348	.	T	C	48.84	.	AC=1;AF=0.500;AN=2;DP=31;FS=0.000;MQ=240.33;MQRankSum=1.004;QD=1.58;ReadPosRankSum=0.711;SOR=0.750;FractionInformativeReads=0.968	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:17,13:0.433:30:9,6:8,7:47:84,0,50:4.8837e+01,7.8526e-05,5.3000e+01:0.00,34.77,37.77:9,8,6,7:11,6,5,8
17	41277187	.	G	C	50.00	.	AC=1;AF=0.500;AN=2;DP=28;FS=1.527;MQ=250.00;MQRankSum=4.480;QD=1.79;ReadPosRankSum=1.585;SOR=0.307;FractionInformativeReads=1.000	GT:AD:AF:DP:F1R2:F2R1:GQ:PL:GP:PRI:SB:MB	0/1:14,14:0.500:28:6,6:8,8:48:85,0,50:5.0000e+01,6.5195e-05,5.3000e+01:0.00,34.77,37.77:5,9,7,7:7,7,9,5
MT	152	.	T	C	.	.	DP=10588;MQ=246.58;FractionInformativeReads=1.000	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:2,10582:1.000:2,5156:0,5426:10584:0,2,5059,5523:0,2,5167,5415
MT	263	.	A	G	.	.	DP=7642;MQ=246.40;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:0,7628:1.000:0,3405:0,4223:7628:0,0,2041,5587:0,0,3626,4002
MT	302	.	A	AC	.	.	DP=4218;MQ=247.67;FractionInformativeReads=0.838	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:96.52:40,3496:0.989:21,1608:19,1888:3536:2,38,44,3452:17,23,1862,1634
MT	310	.	T	TC	.	.	DP=4175;MQ=246.78;FractionInformativeReads=0.896	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:96.88:7,3642:0.973:4,1610:3,2032:3742:0,7,58,3677:3,4,2056,1679
MT	310	.	T	C	.	.	DP=4175;MQ=246.78;FractionInformativeReads=0.896	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.54:7,93:0.025:4,37:3,56:3742:0,7,58,3677:3,4,2056,1679
MT	539	.	T	A	.	.	DP=6473;MQ=235.51;FractionInformativeReads=0.989	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:6115,290:0.045:2525,130:3590,160:6405:2370,3745,289,1:3424,2691,129,161
MT	596	.	T	A	.	.	DP=7892;MQ=207.77;FractionInformativeReads=0.995	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:17.66:7690,160:0.020:3512,99:4178,61:7850:3707,3983,157,3:4085,3605,96,64
MT	605	.	T	A	.	.	DP=6076;MQ=204.20;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:5916,142:0.023:2735,91:3181,51:6058:2903,3013,141,1:3146,2770,90,52
MT	610	.	T	A	.	.	DP=6178;MQ=200.16;FractionInformativeReads=0.992	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:3.40:5986,143:0.023:2788,98:3198,45:6129:2867,3119,143,0:3157,2829,98,45
MT	616	.	T	A	.	.	DP=6279;MQ=197.26;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:0.12:6178,83:0.013:2898,48:3280,35:6261:3085,3093,83,0:3267,2911,48,35
MT	750	.	A	G	.	.	DP=7835;MQ=167.68;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:1,7818:1.000:1,3815:0,4003:7819:1,0,4126,3692:1,0,3979,3839
MT	1438	.	A	G	.	.	DP=9183;MQ=112.29;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:2,9168:1.000:2,4631:0,4537:9170:1,1,4572,4596:1,1,4635,4533
MT	2141	.	T	TAG	.	.	DP=6592;MQ=154.12;FractionInformativeReads=0.954	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:20.00:6260,26:0.004:3130,12:3130,14:6286:3177,3083,7,19:3153,3107,13,13
MT	2259	.	C	T	.	.	DP=7544;MQ=227.78;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:3,7525:1.000:2,3657:1,3868:7528:2,1,3914,3611:3,0,3786,3739
MT	2645	.	G	A	.	.	DP=9206;MQ=168.00;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:9159,34:0.004:4638,16:4521,18:9193:4508,4651,16,18:4619,4540,18,16
MT	3572	.	T	G	.	.	DP=7917;MQ=248.16;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:6937,638:0.081:2745,329:4192,309:7895:1647,5290,943,15:3297,3640,481,477
MT	3572	.	T	A	.	.	DP=7917;MQ=248.16;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.49:6937,320:0.041:2745,163:4192,157:7895:1647,5290,943,15:3297,3640,481,477
MT	3577	.	A	C	.	.	DP=8021;MQ=248.13;FractionInformativeReads=0.995	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:7519,460:0.058:3006,267:4513,193:7979:2383,5136,408,52:3530,3989,235,225
MT	3578	.	T	A	.	.	DP=8000;MQ=248.14;FractionInformativeReads=0.990	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:7041,569:0.072:2752,252:4289,317:7921:1914,5127,788,92:3377,3664,423,457
MT	3578	.	T	G	.	.	DP=8000;MQ=248.14;FractionInformativeReads=0.990	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:7041,311:0.039:2752,231:4289,80:7921:1914,5127,788,92:3377,3664,423,457
MT	3583	.	A	C	.	.	DP=8074;MQ=248.16;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:7746,303:0.038:3179,156:4567,147:8049:2599,5147,264,39:3704,4042,131,172
MT	3590	.	T	A	.	.	DP=8051;MQ=248.23;FractionInformativeReads=0.949	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:6859,779:0.102:2837,316:4022,463:7638:1620,5239,778,1:3372,3487,315,464
MT	3593	.	T	G	.	.	DP=8106;MQ=248.23;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:0.51:7844,234:0.029:3286,106:4558,128:8078:2682,5162,234,0:3784,4060,106,128
MT	3595	.	A	C	.	.	DP=8121;MQ=248.28;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.22:7958,153:0.019:3329,71:4629,82:8111:2867,5091,148,5:3770,4188,66,87
MT	3599	.	T	A	.	.	DP=8145;MQ=248.35;FractionInformativeReads=0.972	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:7408,505:0.064:3093,246:4315,259:7913:2259,5149,498,7:3682,3726,239,266
MT	3605	.	T	A	.	.	DP=5766;MQ=249.86;FractionInformativeReads=0.979	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:5371,274:0.049:2250,122:3121,152:5645:1539,3832,273,1:2710,2661,121,153
MT	3614	.	T	A	.	.	DP=5839;MQ=249.84;FractionInformativeReads=0.974	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:20.35:5553,136:0.024:2327,62:3226,74:5689:1830,3723,132,4:2804,2749,58,78
MT	3631	.	T	A	.	.	DP=5923;MQ=249.88;FractionInformativeReads=0.995	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:20.17:5740,153:0.026:2475,59:3265,94:5893:2116,3624,153,0:2909,2831,59,94
MT	3633	.	T	A	.	.	DP=5980;MQ=249.88;FractionInformativeReads=0.994	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:10.82:5829,114:0.019:2502,42:3327,72:5943:2216,3613,113,1:2939,2890,41,73
MT	4434	.	T	G	.	.	DP=11070;MQ=40.98;FractionInformativeReads=0.712	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:0.79:7711,167:0.021:3810,76:3901,91:7878:3632,4079,2,165:3861,3850,91,76
MT	4491	.	G	A	.	.	DP=11171;MQ=36.78;FractionInformativeReads=0.547	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:14.25:6096,12:0.002:3000,5:3096,7:6108:1723,4373,3,9:3101,2995,10,2
MT	4745	.	A	G	.	.	DP=8622;MQ=56.12;FractionInformativeReads=0.494	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB:PS	1|1:94.10:0,4255:1.000:0,2121:0,2134:4255:0,0,3449,806:0,0,2147,2108:4745
MT	4769	.	A	G	.	.	DP=7846;MQ=58.69;FractionInformativeReads=0.524	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB:PS	1|1:96.49:0,4115:1.000:0,2037:0,2078:4115:0,0,3405,710:0,0,2061,2054:4745
MT	6518	.	C	T	.	.	DP=9527;MQ=114.00;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.40:9464,40:0.004:4669,16:4795,24:9504:4740,4724,18,22:4769,4695,18,22
MT	7337	.	G	A	.	.	DP=10647;MQ=52.11;FractionInformativeReads=0.832	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:93.49:2,8853:1.000:1,4308:1,4545:8855:1,1,4020,4833:2,0,4443,4410
MT	8129	.	A	C	.	.	DP=8194;MQ=123.14;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:20.26:7971,202:0.025:4011,81:3960,121:8173:4635,3336,0,202:3975,3996,121,81
MT	8860	.	A	G	.	.	DP=7566;MQ=38.95;FractionInformativeReads=0.659	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:91.87:0,4988:1.000:0,2331:0,2657:4988:0,0,1956,3032:0,0,2575,2413
MT	13326	.	T	C	.	.	DP=9172;MQ=137.21;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:2,9161:1.000:1,4513:1,4648:9163:1,1,4499,4662:0,2,4587,4574
MT	13680	.	C	T	.	.	DP=5597;MQ=223.37;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:1,5556:0.996:0,2427:1,3129:5581:1,0,2185,3395:0,1,2702,2878
MT	13680	.	C	G	.	.	DP=5597;MQ=223.37;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:25.75:1,24:0.004:0,18:1,6:5581:1,0,2185,3395:0,1,2702,2878
MT	13752	.	T	G	.	.	DP=4794;MQ=249.72;FractionInformativeReads=0.997	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.51:4714,65:0.014:1891,35:2823,30:4779:1247,3467,34,31:2396,2318,18,47
MT	13762	.	T	G	.	.	DP=4708;MQ=249.81;FractionInformativeReads=0.996	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:4509,180:0.038:1799,68:2710,112:4689:992,3517,175,5:2362,2147,63,117
MT	13768	.	T	G	.	.	DP=4797;MQ=249.81;FractionInformativeReads=0.996	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:4623,155:0.032:1875,39:2748,116:4778:1117,3506,149,6:2449,2174,35,120
MT	13769	.	T	G	.	.	DP=4818;MQ=249.81;FractionInformativeReads=0.996	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.53:4684,115:0.024:1911,20:2773,95:4799:1146,3538,113,2:2471,2213,20,95
MT	14831	.	G	A	.	.	DP=8865;MQ=207.09;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:3,8829:0.998:2,4182:1,4647:8846:3,0,4595,4248:2,1,4535,4308
MT	14831	.	G	C	.	.	DP=8865;MQ=207.09;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:49.84:3,14:0.002:2,11:1,3:8846:3,0,4595,4248:2,1,4535,4308
MT	14872	.	C	T	.	.	DP=6672;MQ=204.38;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:5,6662:0.999:3,3178:2,3484:6667:4,1,3354,3308:4,1,3346,3316
MT	14918	.	G	A	.	.	DP=6809;MQ=194.78;FractionInformativeReads=1.000	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:21.37:6570,237:0.035:3161,125:3409,112:6807:3373,3197,121,116:3320,3250,123,114
MT	15326	.	A	G	.	.	DP=7656;MQ=235.28;FractionInformativeReads=0.999	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	1/1:98.13:1,7647:1.000:1,3755:0,3892:7648:1,0,3740,3907:1,0,3774,3873
MT	16023	.	G	A	.	.	DP=9292;MQ=249.42;FractionInformativeReads=0.998	GT:SQ:AD:AF:F1R2:F2R1:DP:SB:MB	0/1:51.92:2572,6705:0.723:1247,3381:1325,3324:9277:1271,1301,3404,3301:1288,1284,3412,3293