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work/bwa_mem2.popdel_call.GL000222__dot__1-1-186861/out/bwa_mem2.popdel_call.GL000222__dot__1-1-186861.vcf.gz work/bwa_mem2.popdel_call.GL000200__dot__1-1-187035/out/bwa_mem2.popdel_call.GL000200__dot__1-1-187035.vcf.gz work/bwa_mem2.popdel_call.GL000193__dot__1-1-189789/out/bwa_mem2.popdel_call.GL000193__dot__1-1-189789.vcf.gz work/bwa_mem2.popdel_call.GL000194__dot__1-1-191469/out/bwa_mem2.popdel_call.GL000194__dot__1-1-191469.vcf.gz work/bwa_mem2.popdel_call.GL000225__dot__1-1-211173/out/bwa_mem2.popdel_call.GL000225__dot__1-1-211173.vcf.gz work/bwa_mem2.popdel_call.GL000192__dot__1-1-547496/out/bwa_mem2.popdel_call.GL000192__dot__1-1-547496.vcf.gz; Date=Mon Jan 23 14:31:37 2023
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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##bcftools_viewCommand=view --output-file work/bwa_mem2.popdel.11_0351-N1-DNA1-WGS1/out/bwa_mem2.popdel.11_0351-N1-DNA1-WGS1.vcf.gz --output-type z --include '(GT !~ "\.") && (GT ~ "1")'; Date=Mon Jan 23 14:34:09 2023
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	index	father	mother
1	1224181	.	N	<DEL>	100	PASS	IMPRECISE;SVLEN=-1621;END=1225801;SVTYPE=DEL;AF=0.151466;LR=1048.74;SVMETHOD=PopDelv1.1.2;YIELD=1;SWIN=480;AC=3;AN=6	GT:PL:GQ:LAD:DAD:FL:FLD	0/1:4,0,30:4:0,0,1:0,0,0,1,0:1223400,1224000:600	0/1:7,0,36:7:0,0,1:0,0,0,1,0:1223490,1223970:480	0/1:80,0,7:7:0,1,5:0,0,1,3,2:1223340,1225380:2040