##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##contig=<ID=ctgA,length=248956422,assembly=GRCh38.d1.vd1>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample_data/raw/volvox/volvox-sorted.bam
ctgA	277	.	T	C	10.4	.	DP=3;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:42,9,0:13
ctgA	1694	.	T	C	107	.	DP=23;VDB=0.0308;AF1=1;AC1=2;DP4=0,1,8,14;MQ=37;FQ=-73;PV4=1,1,0.42,1	GT:PL:GQ	1/1:140,46,0:89
ctgA	2644	.	T	G	44	.	DP=22;VDB=0.0253;AF1=0.5;AC1=1;DP4=6,5,3,8;MQ=37;FQ=45.3;PV4=0.39,1,1,1	GT:PL:GQ	0/1:74,0,77:75
ctgA	3213	.	T	A	124	.	DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,8,11;MQ=36;FQ=-84	GT:PL:GQ	1/1:157,57,0:99
ctgA	3858	.	ctt	ct	160	.	INDEL;DP=15;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,5,6;MQ=37;FQ=-67.5	GT:PL:GQ	1/1:201,33,0:63
ctgA	5496	.	C	G	6.98	.	DP=18;VDB=0.0011;AF1=0.4999;AC1=1;DP4=5,7,4,2;MQ=37;FQ=9.53;PV4=0.62,1,1,1	GT:PL:GQ	0/1:36,0,92:37
ctgA	8471	.	G	T	124	.	DP=21;VDB=0.0355;AF1=1;AC1=2;DP4=0,0,11,10;MQ=37;FQ=-90	GT:PL:GQ	1/1:157,63,0:99
ctgA	9603	.	A	T	126	.	DP=21;VDB=0.0356;AF1=1;AC1=2;DP4=0,0,10,11;MQ=36;FQ=-90	GT:PL:GQ	1/1:159,63,0:99
ctgA	10423	.	T	A	25	.	DP=19;VDB=0.0404;AF1=0.5;AC1=1;DP4=3,7,3,6;MQ=37;FQ=28;PV4=1,1,1,0.27	GT:PL:GQ	0/1:55,0,73:58
ctgA	13202	.	G	T	40	.	DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,8,5,5;MQ=37;FQ=42.8;PV4=0.67,1,1,1	GT:PL:GQ	0/1:70,0,84:73
ctgA	14247	.	ac	aCc	61.5	.	INDEL;DP=22;VDB=0.0404;AF1=0.5;AC1=1;DP4=3,4,6,0;MQ=37;FQ=62.4;PV4=0.07,1,1,1	GT:PL:GQ	0/1:99,0,101:99
ctgA	14481	.	G	A	42	.	DP=21;VDB=0.0394;AF1=0.5;AC1=1;DP4=4,6,5,6;MQ=37;FQ=42;PV4=1,1,1,0.12	GT:PL:GQ	0/1:72,0,72:72
ctgA	15078	.	ta	A	96	.	DP=12;VDB=0.0404;AF1=1;AC1=2;DP4=0,0,4,8;MQ=37;FQ=-63	GT:PL:GQ	1/1:129,36,0:69
ctgA	15163	.	gcc	gCcc	213	.	INDEL;DP=20;VDB=0.0404;AF1=1;AC1=2;DP4=0,0,10,7;MQ=37;FQ=-85.5	GT:PL:GQ	1/1:254,51,0:99
ctgA	15418	.	A	G	64	.	DP=19;VDB=0.0253;AF1=0.5003;AC1=1;DP4=5,1,5,8;MQ=35;FQ=4.13;PV4=0.14,0.26,0.11,1	GT:PL:GQ	0/1:94,0,29:32
ctgA	17042	.	C	T	119	.	DP=22;VDB=0.0394;AF1=1;AC1=2;DP4=0,0,13,9;MQ=37;FQ=-93	GT:PL:GQ	1/1:152,66,0:99
ctgA	18948	.	A	G	57	.	DP=23;VDB=0.0308;AF1=0.5;AC1=1;DP4=6,4,4,9;MQ=37;FQ=39;PV4=0.22,1,0.2,1	GT:PL:GQ	0/1:87,0,66:69
ctgA	19882	.	acg	a	98.5	.	INDEL;DP=22;VDB=0.0374;AF1=0.5;AC1=1;DP4=4,6,3,5;MQ=37;FQ=101;PV4=1,0.049,1,1	GT:PL:GQ	0/1:136,0,202:99
ctgA	20675	.	T	C	40	.	DP=18;VDB=0.0401;AF1=0.5;AC1=1;DP4=5,3,4,6;MQ=36;FQ=31.7;PV4=0.64,1,0.19,0.15	GT:PL:GQ	0/1:70,0,59:62
ctgA	21485	.	C	T,A	118	.	DP=20;VDB=0.0388;AF1=1;AC1=2;DP4=0,0,8,12;MQ=36;FQ=-84	GT:PL:GQ	1/1:151,57,0,150,42,147:99
ctgA	22326	.	C	T	107	.	DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,8;MQ=36;FQ=-69	GT:PL:GQ	1/1:140,42,0:81
ctgA	23636	.	A	C	58	.	DP=19;VDB=0.0320;AF1=0.5;AC1=1;DP4=2,5,5,7;MQ=37;FQ=18.1;PV4=0.66,0.23,1,0.037	GT:PL:GQ	0/1:88,0,45:48
ctgA	23959	.	A	G	118	.	DP=19;VDB=0.0374;AF1=1;AC1=2;DP4=0,0,7,11;MQ=36;FQ=-81	GT:PL:GQ	1/1:151,54,0:99
ctgA	24978	.	C	G	127	.	DP=22;VDB=0.0355;AF1=1;AC1=2;DP4=0,0,11,11;MQ=35;FQ=-93	GT:PL:GQ	1/1:160,66,0:99
ctgA	25558	.	A	C	104	.	DP=27;VDB=0.0371;AF1=1;AC1=2;DP4=0,0,18,7;MQ=36;FQ=-102	GT:PL:GQ	1/1:137,75,0:99
ctgA	26079	.	C	A	29	.	DP=18;VDB=0.0339;AF1=0.5;AC1=1;DP4=6,4,4,4;MQ=36;FQ=31.9;PV4=1,0.14,0.44,0.13	GT:PL:GQ	0/1:59,0,76:62
ctgA	28463	.	T	A	27	.	DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,6,4,5;MQ=36;FQ=30;PV4=1,1,1,1	GT:PL:GQ	0/1:57,0,82:60
ctgA	28719	.	T	G	39	.	DP=18;VDB=0.0333;AF1=0.5;AC1=1;DP4=6,3,5,4;MQ=37;FQ=36.6;PV4=1,1,1,1	GT:PL:GQ	0/1:69,0,65:67
ctgA	29032	.	G	T	103	.	DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,6;MQ=37;FQ=-84	GT:PL:GQ	1/1:136,57,0:99
ctgA	29848	.	C	T	91	.	DP=11;VDB=0.0333;AF1=1;AC1=2;DP4=0,0,5,6;MQ=36;FQ=-60	GT:PL:GQ	1/1:124,33,0:63
ctgA	34015	.	T	A	85	.	DP=10;VDB=0.0339;AF1=1;AC1=2;DP4=0,0,4,6;MQ=37;FQ=-57	GT:PL:GQ	1/1:118,30,0:57
ctgA	35771	.	T	A	99	.	DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,13;MQ=36;FQ=-75	GT:PL:GQ	1/1:132,48,0:93
ctgA	38156	.	C	G	16.1	.	DP=12;VDB=0.0168;AF1=0.5;AC1=1;DP4=3,2,3,2;MQ=37;FQ=16.1;PV4=1,1,1,0.43	GT:PL:GQ	0/1:46,0,46:46
ctgA	39952	.	C	T	124	.	DP=21;VDB=0.0404;AF1=1;AC1=2;DP4=0,0,11,10;MQ=33;FQ=-90	GT:PL:GQ	1/1:157,63,0:99
ctgA	39966	.	T	C	11.3	.	DP=27;VDB=0.0299;AF1=0.5;AC1=1;DP4=11,5,2,7;MQ=34;FQ=14.2;PV4=0.041,1,0.01,1	GT:PL:GQ	0/1:41,0,88:43
ctgA	39983	.	A	T	127	.	DP=24;VDB=0.0355;AF1=1;AC1=2;DP4=0,0,13,11;MQ=34;FQ=-99	GT:PL:GQ	1/1:160,72,0:99
ctgA	41826	.	T	C	110	.	DP=18;VDB=0.0388;AF1=1;AC1=2;DP4=0,0,11,7;MQ=36;FQ=-81	GT:PL:GQ	1/1:143,54,0:99
ctgA	42608	.	G	T	31	.	DP=24;VDB=0.0404;AF1=0.5;AC1=1;DP4=10,4,3,7;MQ=36;FQ=34;PV4=0.095,0.12,0.044,1	GT:PL:GQ	0/1:61,0,82:64
ctgA	43007	.	T	A	36	.	DP=19;VDB=0.0355;AF1=0.5;AC1=1;DP4=3,5,9,2;MQ=36;FQ=30.4;PV4=0.074,1,0.11,1	GT:PL:GQ	0/1:66,0,58:60
ctgA	43354	.	A	C	35	.	DP=20;VDB=0.0147;AF1=0.5;AC1=1;DP4=5,6,5,4;MQ=37;FQ=37.9;PV4=1,1,1,0.39	GT:PL:GQ	0/1:65,0,82:68
ctgA	45666	.	G	T,A	91	.	DP=16;VDB=0.0388;AF1=1;AC1=2;DP4=0,0,10,6;MQ=36;FQ=-72	GT:PL:GQ	1/1:124,45,0,122,31,119:87
ctgA	46994	.	T	A	40	.	DP=24;VDB=0.0308;AF1=0.5;AC1=1;DP4=6,7,7,4;MQ=37;FQ=43;PV4=0.44,1,1,0.49	GT:PL:GQ	0/1:70,0,89:73
ctgA	47847	.	C	A,T	126	.	DP=23;VDB=0.0388;AF1=1;AC1=2;DP4=0,0,9,14;MQ=36;FQ=-93	GT:PL:GQ	1/1:159,66,0,158,51,155:99
ctgA	48199	.	A	T	22	.	DP=17;VDB=0.0320;AF1=0.5;AC1=1;DP4=2,8,4,3;MQ=36;FQ=25;PV4=0.16,1,0.12,0.0062	GT:PL:GQ	0/1:52,0,71:55
ctgA	49288	.	G	A	106	.	DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,7;MQ=35;FQ=-96	GT:PL:GQ	1/1:139,69,0:99